Cho-Yi Chen

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Abhijeet SonawaneInstructor - Brigham and Women's Hospital and Harvard Medical SchoolVerified email at bwh.harvard.edu
Camila M. Lopes-RamosResearch Scientist, Harvard T.H. Chan School of Public HeatlhVerified email at hsph.harvard.edu
John PlatigAssistant Prof. University of VirginiaVerified email at virginia.edu
John QuackenbushHarvard T.H. Chan School of Public Health, Channing Division of Network Medicine, and Dana-FarberVerified email at hsph.harvard.edu
Joseph N PaulsonDFCI, HSPH, PSU, Yale, UMDVerified email at yale.edu
Kimberly GlassAssociate Scientist, Brigham and Women's Hospital; Assistant Professor of Medicine, Harvard MedicalVerified email at channing.harvard.edu
marieke kuijjerUniversity of OsloVerified email at ncmm.uio.no
Maud FagnyGQE – Le Moulon, Université Paris-Saclay, INRAE, CNRS, AgroParisTechVerified email at inrae.fr
Hsuan-Cheng HuangInstitute of Biomedical Informatics, National Yang Ming Chiao Tung UniversityVerified email at ym.edu.tw
Hsueh-Fen JuanDistinguished Professor of Life Science, National Taiwan UniversityVerified email at ntu.edu.tw
George TsengBiostatistics, University of PittsburghVerified email at pitt.edu
Etienne SibilleCAMH & University of Toronto (Psychiatry & Pharmacology)Verified email at camh.ca
David A LewisUniversity of PittsburghVerified email at upmc.edu
Ryan W LoganUniversity of Massachusetts Chan Medical SchoolVerified email at umassmed.edu
Colleen McClungDepartment of Psychiatry, University of PittsburghVerified email at upmc.edu
Chen-Ching LinInstitute of Biomedical Informatics, National Yang-Ming UniversityVerified email at ym.edu.tw
Hsin-Yuan Huang (Robert)California Institute of Technology, Google Quantum AIVerified email at caltech.edu
Christos SotiriouUniversité Libre de BruxellesVerified email at bordet.be
YING DINGXencorVerified email at xencor.com
Zhiguang HuoAssistant Professor, Department of Biostatistics, University of FloridaVerified email at ufl.edu

Cho-Yi Chen

National Yang Ming Chiao Tung University

Verified email at nycu.edu.tw - Homepage

Bioinformatics Computational Systems Biology Machine Learning Medical Informatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Understanding tissue-specific gene regulation AR Sonawane, J Platig, M Fagny, CY Chen, JN Paulson, ... Cell reports 21 (4), 1077-1088, 2017	366	2017
Effects of aging on circadian patterns of gene expression in the human prefrontal cortex CY Chen, RW Logan, T Ma, DA Lewis, GC Tseng, E Sibille, CA McClung Proceedings of the National Academy of Sciences 113 (1), 206-211, 2016	249	2016
Sex differences in gene expression and regulatory networks across 29 human tissues CM Lopes-Ramos, CY Chen, ML Kuijjer, JN Paulson, AR Sonawane, ... Cell reports 31 (12), 2020	232	2020
Exploring regulation in tissues with eQTL networks M Fagny, JN Paulson, ML Kuijjer, AR Sonawane, CY Chen, ... Proceedings of the National Academy of Sciences 114 (37), E7841-E7850, 2017	96	2017
Coregulation of transcription factors and microRNAs in human transcriptional regulatory network CY Chen, ST Chen, CS Fuh, HF Juan, HC Huang BMC bioinformatics 12, 1-10, 2011	94	2011
Lengthening of 3′ UTR increases with morphological complexity in animal evolution CY Chen, ST Chen, HF Juan, HC Huang Bioinformatics 28 (24), 3178-3181, 2012	79	2012
New COVID-19 saliva-based test: How good is it compared with the current nasopharyngeal or throat swab test? KF Hung, YC Sun, BH Chen, JF Lo, CM Cheng, CY Chen, CH Wu, ... Journal of the Chinese Medical Association 83 (10), 891-894, 2020	66	2020
Crosstalk between transcription factors and microRNAs in human protein interaction network CC Lin, YJ Chen, CY Chen, YJ Oyang, HF Juan, HC Huang BMC systems biology 6, 1-13, 2012	59	2012
Regulatory network changes between cell lines and their tissues of origin CM Lopes-Ramos, JN Paulson, CY Chen, ML Kuijjer, M Fagny, J Platig, ... BMC genomics 18, 1-13, 2017	54	2017
Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data JN Paulson, CY Chen, CM Lopes-Ramos, ML Kuijjer, J Platig, ... BMC bioinformatics 18, 1-10, 2017	51	2017
Dissecting the human protein-protein interaction network via phylogenetic decomposition. CY Chen, A Ho, HY Huang, HF Juan, HC Huang Scientific reports 4, 7153-7153, 2014	35	2014
Sexual dimorphism in gene expression and regulatory networks across human tissues CY Chen, C Lopes-Ramos, ML Kuijjer, JN Paulson, AR Sonawane, ... BioRxiv, 082289, 2016	28*	2016
MetaDCN: meta-analysis framework for differential co-expression network detection with an application in breast cancer L Zhu, Y Ding, CY Chen, L Wang, Z Huo, SH Kim, C Sotiriou, ... Bioinformatics 33 (8), 1121-1129, 2017	26	2017
Adaptation to endoplasmic reticulum stress enhances resistance of oral cancer cells to cisplatin by up-regulating polymerase η and increasing DNA repair efficiency CY Chen, M Kawasumi, TY Lan, CL Poon, YS Lin, PJ Wu, YC Chen, ... International Journal of Molecular Sciences 22 (1), 355, 2020	15	2020
GWAS meta-analysis reveals shared genes and biological pathways between major depressive disorder and insomnia YS Lin, CC Wang, CY Chen Genes 12 (10), 1506, 2021	9	2021
John Platig, Maud Fagny, Cho-Yi Chen, Joseph Nathaniel Paulson, Camila Miranda Lopes-Ramos, Dawn Lisa DeMeo, John Quackenbush, Kimberly Glass, and Marieke Lydia Kuijjer … AR Sonawane Cell reports 21 (4), 1077-1088, 2017	9	2017
Understanding tissue-specific gene regulation. Cell Rep. 2017; 21 (4): 1077–88 AR Sonawane, J Platig, M Fagny, CY Chen, JN Paulson, ... Epub 2017/10/27. https://doi. org/10. 1016/j. celrep. 2017.10. 001 PMID …, 0	6
The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks M Ben Guebila, T Wang, CM Lopes-Ramos, V Fanfani, D Weighill, ... Genome Biology 24 (1), 45, 2023	5	2023
A network-based approach to eQTL interpretation and SNP functional characterization M Fagny, JN Paulson, ML Kuijjer, AR Sonawane, CY Chen, ... BioRxiv, 086587, 2016	5	2016
Maud Fagny, John Platig, Kimberly Glass, John Quackenbush, and Dawn L DeMeo. Sex differences in gene expression and regulatory networks across 29 human tissues CM Lopes-Ramos, CY Chen, ML Kuijjer, JN Paulson, AR Sonawane Cell reports 31 (12), 107795, 2020	4	2020

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