Peter Bond
Peter Bond
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Insertion and assembly of membrane proteins via simulation
PJ Bond, MSP Sansom
Journal of the American Chemical Society 128 (8), 2697-2704, 2006
Coarse-grained molecular dynamics simulations of membrane proteins and peptides
PJ Bond, J Holyoake, A Ivetac, S Khalid, MSP Sansom
Journal of structural biology 157 (3), 593-605, 2007
The molecular basis for selective inhibition of unconventional mRNA splicing by an IRE1-binding small molecule
BCS Cross, PJ Bond, PG Sadowski, BK Jha, J Zak, JM Goodman, ...
Proceedings of the National Academy of Sciences 109 (15), E869-E878, 2012
From in silico target prediction to multi-target drug design: Current databases, methods and applications
A Koutsoukas, B Simms, J Kirchmair, PJ Bond, AV Whitmore, S Zimmer, ...
Journal of proteomics 74 (12), 2554-2574, 2011
Computational prediction of metabolism: sites, products, SAR, P450 enzyme dynamics, and mechanisms
J Kirchmair, MJ Williamson, JD Tyzack, L Tan, PJ Bond, A Bender, ...
Journal of chemical information and modeling 52 (3), 617-648, 2012
Coarse-grained MD simulations of membrane protein-bilayer self-assembly
KA Scott, PJ Bond, A Ivetac, AP Chetwynd, S Khalid, MSP Sansom
Structure 16 (4), 621-630, 2008
Membrane protein dynamics versus environment: simulations of OmpA in a micelle and in a bilayer
PJ Bond, MSP Sansom
Journal of molecular biology 329 (5), 1035-1053, 2003
Ion channel gating: insights via molecular simulations
O Beckstein, PC Biggin, P Bond, JN Bright, C Domene, A Grottesi, ...
FEBS letters 555 (1), 85-90, 2003
Coarse-grained simulation: a high-throughput computational approach to membrane proteins
MSP Sansom, KA Scott, PJ Bond
Biochemical Society Transactions 36 (1), 27-32, 2008
Bilayer deformation by the Kv channel voltage sensor domain revealed by self-assembly simulations
PJ Bond, MSP Sansom
Proceedings of the National Academy of Sciences 104 (8), 2631-2636, 2007
OmpA: a pore or not a pore? Simulation and modeling studies
PJ Bond, JD Faraldo-Gómez, MSP Sansom
Biophysical journal 83 (2), 763-775, 2002
Lipid-protein interactions of integral membrane proteins: a comparative simulation study
SS Deol, PJ Bond, C Domene, MSP Sansom
Biophysical journal 87 (6), 3737-3749, 2004
Coarse-grained molecular dynamics simulations of the energetics of helix insertion into a lipid bilayer
PJ Bond, CL Wee, MSP Sansom
Biochemistry 47 (43), 11321-11331, 2008
Design, synthesis, and biological evaluation of an allosteric inhibitor of HSET that targets cancer cells with supernumerary centrosomes
CA Watts, FM Richards, A Bender, PJ Bond, O Korb, O Kern, M Riddick, ...
Chemistry & biology 20 (11), 1399-1410, 2013
Conformational sampling and dynamics of membrane proteins from 10‐nanosecond computer simulations
JD Faraldo‐Gómez, LR Forrest, M Baaden, PJ Bond, C Domene, ...
Proteins: Structure, Function, and Bioinformatics 57 (4), 783-791, 2004
Helix− helix interactions in membrane proteins: Coarse-grained simulations of glycophorin A helix dimerization
E Psachoulia, PW Fowler, PJ Bond, MSP Sansom
Biochemistry 47 (40), 10503-10512, 2008
MD simulations of spontaneous membrane protein/detergent micelle formation
PJ Bond, JM Cuthbertson, SS Deol, MSP Sansom
Journal of the American Chemical Society 126 (49), 15948-15949, 2004
Efficient characterization of protein cavities within molecular simulation trajectories: trj_cavity
T Paramo, A East, D Garzón, MB Ulmschneider, PJ Bond
Journal of chemical theory and computation 10 (5), 2151-2164, 2014
Complete ion-coordination structure in the rotor ring of Na+-dependent F-ATP synthases
T Meier, A Krah, PJ Bond, D Pogoryelov, K Diederichs, ...
Journal of molecular biology 391 (2), 498-507, 2009
Self-assembly of a simple membrane protein: coarse-grained molecular dynamics simulations of the influenza M2 channel
T Carpenter, PJ Bond, S Khalid, MSP Sansom
Biophysical journal 95 (8), 3790-3801, 2008
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