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Petras Kundrotas
Petras Kundrotas
Unknown affiliation
Verified email at ku.edu
Title
Cited by
Cited by
Year
A structural biology community assessment of AlphaFold2 applications
M Akdel, DEV Pires, EP Pardo, J Jänes, AO Zalevsky, B Mészáros, ...
Nature Structural & Molecular Biology 29 (11), 1056-1067, 2022
3442022
Templates are available to model nearly all complexes of structurally characterized proteins
PJ Kundrotas, Z Zhu, J Janin, IA Vakser
Proceedings of the National Academy of Sciences 109 (24), 9438-9441, 2012
2172012
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
1642016
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
1112019
Towards a structurally resolved human protein interaction network
DF Burke, P Bryant, I Barrio-Hernandez, D Memon, G Pozzati, A Shenoy, ...
Nature Structural & Molecular Biology 30 (2), 216-225, 2023
1052023
Electrostatic properties of protein-protein complexes
PJ Kundrotas, E Alexov
Biophysical journal 91 (5), 1724-1736, 2006
1032006
Docking by structural similarity at protein‐protein interfaces
R Sinha, PJ Kundrotas, IA Vakser
Proteins: Structure, Function, and Bioinformatics 78 (15), 3235-3241, 2010
1012010
Predicting the structure of large protein complexes using AlphaFold and Monte Carlo tree search
P Bryant, G Pozzati, W Zhu, A Shenoy, P Kundrotas, A Elofsson
Nature communications 13 (1), 6028, 2022
962022
Dockground: a comprehensive data resource for modeling of protein complexes
PJ Kundrotas, I Anishchenko, T Dauzhenka, I Kotthoff, D Mnevets, ...
Protein Science 27 (1), 172-181, 2018
812018
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021
762021
Optimization of electrostatic interactions in protein-protein complexes
K Brock, K Talley, K Coley, P Kundrotas, E Alexov
Biophysical journal 93 (10), 3340-3352, 2007
652007
PROTCOM: searchable database of protein complexes enhanced with domain–domain structures
PJ Kundrotas, E Alexov
Nucleic acids research 35 (suppl_1), D575-D579, 2007
642007
Predicting 3D structures of protein-protein complexes
IA Vakser, P Kundrotas
Current pharmaceutical biotechnology 9 (2), 57-66, 2008
632008
Blind prediction of interfacial water positions in CAPRI
MF Lensink, IH Moal, PA Bates, PL Kastritis, ASJ Melquiond, E Karaca, ...
Proteins: Structure, Function, and Bioinformatics 82 (4), 620-632, 2014
612014
On the electrostatic component of protein-protein binding free energy
K Talley, C Ng, M Shoppell, P Kundrotas, E Alexov
PMC biophysics 1, 1-23, 2008
612008
Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives
PJ Kundrotas, EG Alexov
BMC bioinformatics 7, 1-9, 2006
602006
Homology-based modeling of 3D structures of protein–protein complexes using alignments of modified sequence profiles
PJ Kundrotas, MF Lensink, E Alexov
International journal of biological macromolecules 43 (2), 198-208, 2008
582008
GWIDD: genome-wide protein docking database
PJ Kundrotas, Z Zhu, IA Vakser
Nucleic acids research 38 (suppl_1), D513-D517, 2010
522010
On the Ising model for the simple cubic lattice
R Häggkvist, A Rosengren, PH Lundow, K Markström, D Andrén, ...
Advances in Physics 56 (5), 653-755, 2007
502007
Accuracy of protein-protein binding sites in high-throughput template-based modeling
PJ Kundrotas, IA Vakser
PLoS computational biology 6 (4), e1000727, 2010
492010
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