Gut microbiota-derived tryptophan metabolites modulate inflammatory response in hepatocytes and macrophages S Krishnan, Y Ding, N Saedi, M Choi, GV Sridharan, DH Sherr, ...
Cell reports 23 (4), 1099-1111, 2018
496 2018 Interactions between gut microbiota and non-alcoholic liver disease: The role of microbiota-derived metabolites Y Ding, K Yanagi, C Cheng, RC Alaniz, K Lee, A Jayaraman
Pharmacological research 141, 521-529, 2019
93 2019 Maximizing CRISPRi efficacy and accessibility with dual-sgRNA libraries and optimal effectors JM Replogle, JL Bonnar, AN Pogson, CR Liem, NK Maier, Y Ding, ...
Elife 11, e81856, 2022
31 2022 Mathematical Modeling and Parameter Estimation of Intracellular Signaling Pathway: Application to LPS-induced NFκ B Activation and TNFα Production in … D Lee, Y Ding, A Jayaraman, JS Kwon
Processes 6 (3), 21, 2018
26 2018 Embedding synthetic microvascular networks in poly (lactic acid) substrates with rounded cross-sections for cell culture applications JH Huang, J Kim, Y Ding, A Jayaraman, VM Ugaz
PLoS One 8 (9), e73188, 2013
19 2013 Gut microbiota-derived tryptophan metabolites modulate inflammatory response in hepatocytes and macrophages. Cell Rep. 2018; 23 (4): 1099–111 S Krishnan, Y Ding, N Saedi, M Choi, GV Sridharan, DH Sherr, ...
8 Gut microbiota-derived tryptophan metabolites modulate inflammatory response in hepatocytes and macrophages. Cell Rep. 2018; 23: 1099–111 S Krishnan, Y Ding, N Saedi, M Choi, GV Sridharan, DH Sherr, ...
6 Oral supplementation of gut microbial metabolite indole-3-acetate alleviates diet-induced steatosis and inflammation in mice Y Ding, K Yanagi, F Yang, E Callaway, C Cheng, ME Hensel, R Menon, ...
Elife 12, RP87458, 2024
2 2024 A metabolically engineered bacterium controls autoimmunity and inflammation by remodeling the pro-inflammatory microenvironment JK Das, F Guo, C Hunt, S Steinmeyer, JA Plocica, KS Kobayashi, Y Ding, ...
Gut Microbes 14 (1), 2143222, 2022
1 2022 Modeling inter-kingdom regulation of inflammatory signaling in human intestinal epithelial cells S Maiti, G Grivas, K Choi, W Dai, Y Ding, DP Acosta, J Hahn, ...
Computers & chemical engineering 140, 106954, 2020
1 2020 Microbiota Regulation of Pro-atherogenic Phagocytes− Separating Metabolic and Inflammatory Mechanisms. S Eshghjoo, Y Ding, C Hunt, A Jayaraman, RC Alaniz
The Journal of Immunology 200 (1_Supplement), 108.20-108.20, 2018
1 2018 Microbiota metabolites derived from tryptophan modulate macrophage inflammation and migration through AMP-activated protein kinase Y Ding, S Krishnan, RC Alaniz, K Lee, A Jayaraman
The Journal of Immunology 200 (1_Supplement), 53.18-53.18, 2018
1 2018 A metabolically engineered bacterial vaccine protects against arthritis in mice P de Figueiredo, F Guo, J Das, Y Ding, A Jayaraman, RC Alaniz, J Song
The Journal of Immunology 206 (1_Supplement), 66.13-66.13, 2021
2021 Derivation of a Dynamic Model for Palmitate-induced NFκB Signaling Pathway through Systems Biology Approach D Lee, Y Ding, A Jayaraman, JSI Kwon
2020 American Control Conference (ACC), 5028-5033, 2020
2020 Integrative Analysis of Free Fatty Acid-Induced NFκB Activation in Macrophages: A Step Towards the Quantitative Understanding of Inflammation Induced By Obesity D Lee, Y Ding, A Jayaraman, J Kwon
2019 AIChE Annual Meeting, 2019
2019 Microbiota Derived Metabolites as Modulators of Inflammation in Non-alcoholic Fatty Liver Disease Y Ding
2019 Integrative Approach to Extract the Single-cell Dynamics of LPS-induced Signal Pathway through Flow Cytometry Measurements and Parameter Estimation D Lee, Y Ding, A Jayaraman, JSI Kwon
2018 Annual American Control Conference (ACC), 1975-1980, 2018
2018 Modeling LPS-Induced TNF-α Production in Macrophages D Lee, Y Ding, A Jayaraman, JSI Kwon
2017 AIChE Annual Meeting, 2017
2017 Microbiota metabolites derived from tryptophan modulate macrophage inflammation and migration in non-alcoholic fatty liver disease Y Ding, S Krishnan, K Lee, A Jayaraman
The Journal of Immunology 198 (1_Supplement), 197.14-197.14, 2017
2017 Using metabolomics to identify gut microbiota-derived metabolites as host inflammation modulators K Lee, S Krishnan, M Choi, Y Ding, N Saedi, A Jayaraman, ML Yarmush
11th Metabolic Engineering Conference 2016, 177-178, 2016
2016