|limma powers differential expression analyses for RNA-sequencing and microarray studies|
ME Ritchie, B Phipson, DI Wu, Y Hu, CW Law, W Shi, GK Smyth
Nucleic acids research 43 (7), e47-e47, 2015
|voom: Precision weights unlock linear model analysis tools for RNA-seq read counts|
CW Law, Y Chen, W Shi, GK Smyth
Genome biology 15 (2), R29, 2014
|RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR|
CW Law, M Alhamdoosh, S Su, X Dong, L Tian, GK Smyth, ME Ritchie
F1000Research 5, 2016
|Effective adjunctive therapy by an innate defense regulatory peptide in a preclinical model of severe malaria|
AH Achtman, S Pilat, CW Law, DJ Lynn, L Janot, ML Mayer, S Ma, ...
Science Translational Medicine 4 (135), 135ra64-135ra64, 2012
|Statistical methods for detecting differentially methylated loci and regions|
MD Robinson, A Kahraman, CW Law, H Lindsay, M Nowicka, LM Weber, ...
Frontiers in genetics 5, 324, 2014
|Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usage|
C Soneson, KL Matthes, M Nowicka, CW Law, MD Robinson
Genome biology 17 (1), 1-15, 2016
|Identification of quiescent and spatially restricted mammary stem cells that are hormone responsive|
NY Fu, AC Rios, B Pal, CW Law, P Jamieson, R Liu, F Vaillant, F Jackling, ...
Nature cell biology 19 (3), 164-176, 2017
|Glimma: interactive graphics for gene expression analysis|
S Su, CW Law, C Ah-Cann, ML Asselin-Labat, ME Blewitt, ME Ritchie
Bioinformatics 33 (13), 2050-2052, 2017
|The hematopoietic oncoprotein FOXP1 promotes tumor cell survival in diffuse large B-cell lymphoma by repressing S1PR2 signaling|
M Flori, CA Schmid, ET Sumrall, A Tzankov, CW Law, MD Robinson, ...
Blood, The Journal of the American Society of Hematology 127 (11), 1438-1448, 2016
|Easy and efficient ensemble gene set testing with EGSEA|
M Alhamdoosh, CW Law, L Tian, JM Sheridan, M Ng, ME Ritchie
F1000Research 6, 2017
|DNMT3L is a regulator of X chromosome compaction and post-meiotic gene transcription|
NM Zamudio, HS Scott, K Wolski, CY Lo, C Law, D Leong, SA Kinkel, ...
PLoS One 6 (3), e18276, 2011
|RNA-seq mixology: designing realistic control experiments to compare protocols and analysis methods|
AZ Holik, CW Law, R Liu, Z Wang, W Wang, J Ahn, ML Asselin-Labat, ...
Nucleic acids research 45 (5), e30-e30, 2017
|Toward a gold standard for benchmarking gene set enrichment analysis|
L Geistlinger, G Csaba, M Santarelli, M Ramos, L Schiffer, N Turaga, ...
Briefings in Bioinformatics, 2020
|Precision weights for gene expression analysis|
|Germline heterozygous mutations in Nxf1 perturb RNA metabolism and trigger thrombocytopenia and lymphopenia in mice|
S Chappaz, CW Law, MR Dowling, KT Carey, RM Lane, LH Ngo, ...
Blood advances 4 (7), 1270-1283, 2020
|Covering all your bases: incorporating intron signal from RNA-seq data|
S Lee, AY Zhang, S Su, AP Ng, AZ Holik, ML Asselin-Labat, ME Ritchie, ...
NAR Genomics and Bioinformatics 2 (3), lqaa073, 2020
|A guide to creating design matrices for gene expression experiments|
CW Law, K Zeglinski, X Dong, M Alhamdoosh, GK Smyth, ME Ritchie
F1000Research 9, 1444, 2020
|Comprehensive characterization of single cell full-length isoforms in human and mouse with long-read sequencing|
L Tian, JS Jabbari, R Thijssen, Q Gouil, SL Amarasinghe, H Kariyawasam, ...
|The long and the short of it: unlocking nanopore long-read RNA sequencing data with short-read tools|
X Dong, L Tian, Q Gouil, H Kariyawasam, S Su, R De Paoli-Iseppi, ...
|benchmarkR: an R package for benchmarking genome-scale methods|
X Zhou, CW Law, MD Robinson
BioRxiv, 018200, 2015