Emanuele Paci

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Michele VendruscoloProfessor of Biophysics, University of CambridgeAdresse e-mail validée de cam.ac.uk
David J BrockwellProfessor, University of LeedsAdresse e-mail validée de leeds.ac.uk
Sheena RadfordThe University of LeedsAdresse e-mail validée de leeds.ac.uk
Christopher DobsonUniversity of CambridgeAdresse e-mail validée de cam.ac.uk
Peter D. OlmstedJoseph Semmes Ives Chair in Physics, Georgetown UniversityAdresse e-mail validée de georgetown.edu
Robert BestSenior Investigator, National Institutes of HealthAdresse e-mail validée de helix.nih.gov
Amedeo CaflischDepartment of Biochemistry, University of ZurichAdresse e-mail validée de bioc.uzh.ch
Kresten Lindorff-LarsenLinderstrøm-Lang Centre for Protein Science, Department of Biology, University of CopenhagenAdresse e-mail validée de bio.ku.dk
Lorna DouganProfessor of Physics, University of Leeds, School of Physics & AstronomyAdresse e-mail validée de leeds.ac.uk
Massimo MarchiCommissariat à l'Energie AtomiqueAdresse e-mail validée de cea.fr
Sergei Krivov :)RCUK fellow, Leeds UniversityAdresse e-mail validée de leeds.ac.uk
José Luis Toca-HerreraFull Professor (Biophysics), Institute for Biophysics, Department of Nanobiotechnology, BOKU-ViennaAdresse e-mail validée de boku.ac.at
david glowackiInvestigador Dinstinguido, CiTIUSAdresse e-mail validée de usc.es
Igor NeelovITMO University, Institute of BioengineeringAdresse e-mail validée de corp.ifmo.ru
Dmitrii ShalashilinProfessor of Computational Chemistry, University of LeedsAdresse e-mail validée de leeds.ac.uk
Andrea CavalliUniversity of Cambridge, UK. IRB Bellinzona, SwitzerlandAdresse e-mail validée de irb.usi.ch
Nikolay DokholyanG. Thomas Passananti ProfessorAdresse e-mail validée de psu.edu
Fiona WhelanUniversity of AdelaideAdresse e-mail validée de adelaide.edu.au
Gabriel WaksmanUCL and BirkbeckAdresse e-mail validée de ucl.ac.uk
Luca BellucciNEST, CNR-NANO and Scuola Normale Superiore, Pisa, ItalyAdresse e-mail validée de nano.cnr.it

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Emanuele Paci

University of Leeds

Adresse e-mail validée de leeds.ac.uk - Page d'accueil

biophysics computational chemistry biochemistry computational biology


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
CHARMM: the biomolecular simulation program BR Brooks, CL Brooks III, AD Mackerell Jr, L Nilsson, RJ Petrella, B Roux, ... Journal of computational chemistry 30 (10), 1545-1614, 2009	7174	2009
Three key residues form a critical contact network in a protein folding transition state M Vendruscolo, E Paci, CM Dobson, M Karplus Nature 409 (6820), 641-645, 2001	483	2001
Small-world view of the amino acids that play a key role in protein folding M Vendruscolo, NV Dokholyan, E Paci, M Karplus Physical Review E 65 (6), 061910, 2002	427	2002
Pulling geometry defines the mechanical resistance of a β-sheet protein DJ Brockwell, E Paci, RC Zinober, GS Beddard, PD Olmsted, DA Smith, ... Nature Structural & Molecular Biology 10 (9), 731-737, 2003	421	2003
Forced unfolding of fibronectin type 3 modules: an analysis by biased molecular dynamics simulations E Paci, M Karplus Journal of molecular biology 288 (3), 441-459, 1999	376	1999
Unfolding proteins by external forces and temperature: the importance of topology and energetics E Paci, M Karplus Proceedings of the National Academy of Sciences 97 (12), 6521-6526, 2000	343	2000
Mechanical unfolding of a titin Ig domain: structure of unfolding intermediate revealed by combining AFM, molecular dynamics simulations, NMR and protein engineering SB Fowler, RB Best, JLT Herrera, TJ Rutherford, A Steward, E Paci, ... Journal of molecular biology 322 (4), 841-849, 2002	226	2002
ORAC: A molecular dynamics program to simulate complex molecular systems with realistic electrostatic interactions P Procacci, TA Darden, E Paci, M Marchi Journal of computational chemistry 18 (15), 1848-1862, 1997	200	1997
Allostery in its many disguises: from theory to applications SJ Wodak, E Paci, NV Dokholyan, IN Berezovsky, A Horovitz, J Li, ... Structure 27 (4), 566-578, 2019	196	2019
Mechanical unfolding of a titin Ig domain: structure of transition state revealed by combining atomic force microscopy, protein engineering and molecular dynamics simulations RB Best, SB Fowler, JLT Herrera, A Steward, E Paci, J Clarke Journal of molecular biology 330 (4), 867-877, 2003	184	2003
Mechanically unfolding the small, topologically simple protein L DJ Brockwell, GS Beddard, E Paci, DK West, PD Olmsted, DA Smith, ... Biophysical journal 89 (1), 506-519, 2005	180	2005
Pulling direction as a reaction coordinate for the mechanical unfolding of single molecules RB Best, E Paci, G Hummer, OK Dudko The Journal of Physical Chemistry B 112 (19), 5968-5976, 2008	143	2008
Rare fluctuations of native proteins sampled by equilibrium hydrogen exchange M Vendruscolo, E Paci, CM Dobson, M Karplus Journal of the American Chemical Society 125 (51), 15686-15687, 2003	131	2003
Mechanical resistance of proteins explained using simple molecular models DK West, DJ Brockwell, PD Olmsted, SE Radford, E Paci Biophysical journal 90 (1), 287-297, 2006	126	2006
Mechanical unfolding of TNfn3: the unfolding pathway of a fnIII domain probed by protein engineering, AFM and MD simulation SP Ng, RWS Rounsevell, A Steward, CD Geierhaas, PM Williams, E Paci, ... Journal of molecular biology 350 (4), 776-789, 2005	124	2005
Determination of a transition state at atomic resolution from protein engineering data E Paci, M Vendruscolo, CM Dobson, M Karplus Journal of molecular biology 324 (1), 151-163, 2002	118	2002
Protein folding and the organization of the protein topology universe K Lindorff-Larsen, P Røgen, E Paci, M Vendruscolo, CM Dobson Trends in biochemical sciences 30 (1), 13-19, 2005	117	2005
The remarkable mechanical strength of polycystin-1 supports a direct role in mechanotransduction JR Forman, S Qamar, E Paci, RN Sandford, J Clarke Journal of molecular biology 349 (4), 861-871, 2005	114	2005
Transition states for protein folding have native topologies despite high structural variability K Lindorff-Larsen, M Vendruscolo, E Paci, CM Dobson Nature structural & molecular biology 11 (5), 443-449, 2004	106	2004
Structures and relative free energies of partially folded states of proteins M Vendruscolo, E Paci, M Karplus, CM Dobson Proceedings of the National Academy of Sciences 100 (25), 14817-14821, 2003	100	2003

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