Aurelie PIRAYRE
Aurelie PIRAYRE
PhD Student, IFP Energies nouvelles
Adresse e-mail validée de esiee.fr - Page d'accueil
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BRANE Cut: biologically-related a priori network enhancement with graph cuts for gene regulatory network inference
A Pirayre, C Couprie, F Bidard, L Duval, JC Pesquet
BMC bioinformatics 16 (1), 369, 2015
152015
Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper-producer Trichoderma reesei strain
D Poggi-Parodi, F Bidard, A Pirayre, T Portnoy, C Blugeon, B Seiboth, ...
Biotechnology for biofuels 7 (1), 1-16, 2014
152014
BRANE Clust: Cluster-assisted gene regulatory network inference refinement
A Pirayre, C Couprie, L Duval, JC Pesquet
IEEE/ACM transactions on computational biology and bioinformatics 15 (3 …, 2017
132017
Fast convex optimization for connectivity enforcement in gene regulatory network inference
A Pirayre, C Couprie, L Duval, JC Pesquet
2015 IEEE International Conference on Acoustics, Speech and Signal …, 2015
82015
HOGMep: Variational Bayes and higher-order graphical models applied to joint image recovery and segmentation
A Pirayre, Y Zheng, L Duval, JC Pesquet
2017 IEEE International Conference on Image Processing (ICIP), 3775-3779, 2017
72017
Graph inference enhancement with clustering: Application to gene regulatory network reconstruction
A Pirayre, C Couprie, L Duval, JC Pesquet
2015 23rd European Signal Processing Conference (EUSIPCO), 2406-2410, 2015
42015
Glucose-lactose mixture feeds in industry-like conditions: a gene regulatory network analysis on the hyperproducing Trichoderma reesei strain Rut-C30
A Pirayre, L Duval, C Blugeon, C Firmo, S Perrin, E Jourdier, A Margeot, ...
BMC genomics 21 (1), 1-17, 2020
2020
Gene regulatory network analysis of Trichoderma reesei grown on glucose-lactose mixtures suggests links between development and cellulase production
A Pirayre, L Duval, C Blugeon, C Firmo, S Perrin, E Jourdier, A Margeot, ...
2020
A review on graph optimization and algorithmic frameworks
A Benfenati, E Chouzenoux, L Duval, JC Pesquet, A Pirayre
LIGM-Laboratoire d'Informatique Gaspard-Monge, 2018
2018
Pics, ligne de base, bruit: séparation ternaire de sources assistée (BEADS: positivité, parcimonie), spectres chimiques & miscellanées
L DUVAL, A PIRAYRE, X NING, IW SELESNICK
2018
Retour sur... la ligne de base BEADS: correction et filtrage conjoints de mesures analytiques exploitant positivité et parcimonie
X NING, IW SELESNICK, L DUVAL, A PIRAYRE
2017
Reconstruction and clustering with graph optimization and priors on gene networks and images
A Pirayre
Université Paris Est-Marne-la-Vallée, 2017
2017
Reconstruction et classification par optimisation dans des graphes avec à priori pour les réseaux de gènes et les images
A Pirayre
Paris Est, 2017
2017
Joint restoration/segmentation of multicomponent images with variationalBayes and higher-order graphical models (HOGMep)
Y Zheng, A Pirayre, L Duval, JC Pesquet
2017
Additional file 1 BRANE Cut: Model parameters and sensitivy analysis
A Pirayre, C Couprie, F Bidard, L Duval, JC Pesquet
2015
Suppression de ligne de base et débruitage de chromatogrammes par pénalisation asymétrique de positivité et dérivées parcimonieuses
L Duval, A Pirayre, X Ning, I Selesnick
GRETSI: Colloque francophone de traitement du signal et des images, 2015
2015
The cellulase induction system in Trichoderma reesei strains remains well conserved despite several generations of random mutagenesis and screening
D Poggi-Parodi, A Pirayre, T Portnoy, H Mathis, T Aouam, F Bidard, ...
New Biotechnology, S216, 2014
2014
Discrete vs Continuous Optimization for Gene Regulatory Network Inference
A Pirayre, C Couprie, L Duval, JC Pesquet
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Articles 1–18