Christophe Klopp
Christophe Klopp
Research engineer
Adresse e-mail validée de inrae.fr
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The tomato genome sequence provides insights into fleshy fruit evolution
Tomato Genome Consortium
Nature 485 (7400), 635, 2012
23392012
The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates
C Berthelot, F Brunet, D Chalopin, A Juanchich, M Bernard, B Noël, ...
Nature communications 5 (1), 1-10, 2014
6702014
Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle
HD Daetwyler, A Capitan, H Pausch, P Stothard, R Van Binsbergen, ...
Nature genetics 46 (8), 858-865, 2014
6122014
jvenn: an interactive Venn diagram viewer
P Bardou, J Mariette, F Escudié, C Djemiel, C Klopp
BMC bioinformatics 15 (1), 1-7, 2014
5722014
The BioMart community portal: an innovative alternative to large, centralized data repositories
D Smedley, S Haider, S Durinck, L Pandini, P Provero, J Allen, O Arnaiz, ...
Nucleic acids research 43 (W1), W589-W598, 2015
5452015
Metabolic adaptation to a high-fat diet is associated with a change in the gut microbiota
M Serino, E Luche, S Gres, A Baylac, M Bergé, C Cenac, A Waget, ...
Gut 61 (4), 543-553, 2012
5202012
An immune-related gene evolved into the master sex-determining gene in rainbow trout, Oncorhynchus mykiss
A Yano, R Guyomard, B Nicol, E Jouanno, E Quillet, C Klopp, C Cabau, ...
Current Biology 22 (15), 1423-1428, 2012
3802012
Involvement of tissue bacteria in the onset of diabetes in humans: evidence for a concept
J Amar, M Serino, C Lange, C Chabo, J Iacovoni, S Mondot, P Lepage, ...
Diabetologia 54 (12), 3055-3061, 2011
2802011
Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes
L Tasse, J Bercovici, S Pizzut-Serin, P Robe, J Tap, C Klopp, BL Cantarel, ...
Genome research 20 (11), 1605-1612, 2010
2192010
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database
J Pasquier, C Cabau, T Nguyen, E Jouanno, D Severac, I Braasch, ...
BMC genomics 17 (1), 1-10, 2016
1802016
Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets
Z Asma, C Sylvie, C Laurent, M Jérôme, K Christophe, B Olivier, ...
FEMS microbiology ecology 83 (2), 504-514, 2013
1602013
Design and characterization of a 52K SNP chip for goats
G Tosser-Klopp, P Bardou, O Bouchez, C Cabau, R Crooijmans, Y Dong, ...
PloS one 9 (1), e86227, 2014
1592014
Detection of haplotypes associated with prenatal death in dairy cattle and identification of deleterious mutations in GART, SHBG and SLC37A2
S Fritz, A Capitan, A Djari, SC Rodriguez, A Barbat, A Baur, C Grohs, ...
PloS one 8 (6), e65550, 2013
1572013
Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase
E Fleury, A Huvet, C Lelong, J De Lorgeril, V Boulo, Y Gueguen, ...
BMC genomics 10 (1), 1-15, 2009
1442009
Oak genome reveals facets of long lifespan
C Plomion, JM Aury, J Amselem, T Leroy, F Murat, S Duplessis, S Faye, ...
Nature Plants 4 (7), 440-452, 2018
1272018
D-GENIES: dot plot large genomes in an interactive, efficient and simple way
F Cabanettes, C Klopp
PeerJ 6, e4958, 2018
1182018
De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology
J Canales, R Bautista, P Label, J Gómez‐Maldonado, I Lesur, ...
Plant Biotechnology Journal 12 (3), 286-299, 2014
1072014
Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing
C Billerey, M Boussaha, D Esquerré, E Rebours, A Djari, C Meersseman, ...
BMC genomics 15 (1), 1-10, 2014
1042014
Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies
C Plomion, JM Aury, J Amselem, T Alaeitabar, V Barbe, C Belser, ...
Molecular ecology resources 16 (1), 254-265, 2016
942016
Attenuated sensing of SHH by Ptch1 underlies evolution of bovine limbs
J Lopez-Rios, A Duchesne, D Speziale, G Andrey, KA Peterson, ...
Nature 511 (7507), 46-51, 2014
932014
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