Travis Wheeler

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Sean R. EddyHHMI & Harvard UniversityAdresse e-mail validée de fas.harvard.edu
Robert D. FinnMicrobiome Informatics Team Leader, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambs, CB10 1SDAdresse e-mail validée de ebi.ac.uk
Jody ClementsPrincipal Software Engineer, Janelia Farm Research Campus, HHMIAdresse e-mail validée de janelia.hhmi.org
Robert HubleyInstitute for Systems BiologyAdresse e-mail validée de systemsbiology.org
John KececiogluProfessor of Computer Science, The University of ArizonaAdresse e-mail validée de cs.arizona.edu
Peter HornbeckCell Signaling TechnologyAdresse e-mail validée de cellsignal.com
Alex BatemanHead of Protein Sequence Resources, EMBL-EBIAdresse e-mail validée de ebi.ac.uk
Jessica StorerPostdoctoral Associate, Institute for Systems BiologyAdresse e-mail validée de systemsbiology.org
Jeremiah GaiserUniversity of Montana, NIH/NIAIDAdresse e-mail validée de umontana.edu
Daniel OlsonPhD Student, University of MontanaAdresse e-mail validée de umontana.edu
Patrick R. SecorUniversity of MontanaAdresse e-mail validée de mso.umt.edu
Jeffrey M. GoodProfessor, University of MontanaAdresse e-mail validée de mso.umt.edu
Laura K. Jennings, PhDUniversity of MontanaAdresse e-mail validée de mso.umt.edu
Mark GrimesUniversity of MontanaAdresse e-mail validée de mso.umt.edu
Thomas H. ColliganNASA GSFC / University of Maryland College ParkAdresse e-mail validée de umd.edu
Gilia PattersonPhD Student, University of OregonAdresse e-mail validée de uoregon.edu
Dan DeBlasioAssistant Teaching Professor, Computational Biology Department, Carnegie Mellon UniversityAdresse e-mail validée de cs.cmu.edu
Tony HeitkamUniversity of Graz | Technische Universität DresdenAdresse e-mail validée de tu-dresden.de
Tyler A. ElliottResearch Associate, Adamowicz Lab, University of GuelphAdresse e-mail validée de uoguelph.ca
Alexander SuhLeibniz Institute for the Analysis of Biodiversity Change & University of BonnAdresse e-mail validée de leibniz-lib.de

Suivre

Travis Wheeler

Associate Professor, Dept Pharmacy Practice & Science, U. Arizona

Adresse e-mail validée de traviswheeler.com - Page d'accueil

algorithms computational biology sequence annotation drug discovery animal tracking


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
HMMER web server: 2015 update RD Finn, J Clements, W Arndt, BL Miller, TJ Wheeler, F Schreiber, ... Nucleic acids research 43 (W1), W30-W38, 2015	887	2015
nhmmer: DNA homology search with profile HMMs TJ Wheeler, SR Eddy Bioinformatics 29 (19), 2487-2489, 2013	743	2013
The Dfam database of repetitive DNA families R Hubley, RD Finn, J Clements, SR Eddy, TA Jones, W Bao, AFA Smit, ... Nucleic acids research 44 (D1), D81-D89, 2016	612	2016
Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models TJ Wheeler, J Clements, RD Finn BMC Bioinformatics 15 (1), 7, 2014	352	2014
The Dfam community resource of transposable element families, sequence models, and genome annotations J Storer, R Hubley, J Rosen, TJ Wheeler, AF Smit Mobile DNA 12, 1-14, 2021	336	2021
Multiple alignment by aligning alignments TJ Wheeler, JD Kececioglu Bioinformatics 23 (13), i559-i568, 2007	302	2007
Dfam: a database of repetitive DNA based on profile hidden Markov models TJ Wheeler, J Clements, SR Eddy, R Hubley, TA Jones, J Jurka, AFA Smit, ... Nucleic acids research 41 (D1), D70-D82, 2012	268	2012
Complete genomic and epigenetic maps of human centromeres N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani, SA Langley, ... Science 376 (6588), eabl4178, 2022	246	2022
15 years of PhosphoSitePlus^®: integrating post-translationally modified sites, disease variants and isoforms PV Hornbeck, JM Kornhauser, V Latham, B Murray, V Nandhikonda, ... Nucleic acids research 47 (D1), D433-D441, 2019	230	2019
From telomere to telomere: The transcriptional and epigenetic state of human repeat elements SJ Hoyt, JM Storer, GA Hartley, PGS Grady, A Gershman, LG de Lima, ... Science 376 (6588), eabk3112, 2022	182	2022
Large-scale neighbor-joining with NINJA TJ Wheeler International Workshop on Algorithms in Bioinformatics, 375-389, 2009	111	2009
A call for benchmarking transposable element annotation methods DR Hoen, G Hickey, G Bourque, J Casacuberta, R Cordaux, C Feschotte, ... Mobile DNA 6 (1), 1-9, 2015	94	2015
Pf Bacteriophage and Their Impact on Pseudomonas Virulence, Mammalian Immunity, and Chronic Infections PR Secor, EB Burgener, M Kinnersley, LK Jennings, V Roman-Cruz, ... Frontiers in Immunology 11, 2020	80	2020
Complete nucleomorph genome sequence of the nonphotosynthetic alga Cryptomonas paramecium reveals a core nucleomorph gene set G Tanifuji, NT Onodera, TJ Wheeler, M Dlutek, N Donaher, JM Archibald Genome biology and evolution 3, 44-54, 2011	76	2011
Integration of protein phosphorylation, acetylation, and methylation data sets to outline lung cancer signaling networks M Grimes, B Hall, L Foltz, T Levy, K Rikova, J Gaiser, W Cook, E Smirnova, ... Science signaling 11 (531), eaaq1087, 2018	53	2018
Transposable element orientation bias in the Drosophila melanogaster genome AD Cutter, JM Good, CT Pappas, MA Saunders, DM Starrett, TJ Wheeler Journal of molecular evolution 61 (6), 733-741, 2005	26	2005
ULTRA: A Model Based Tool to Detect Tandem Repeats D Olson, T Wheeler ACM-BCB ’18, 2018	25	2018
Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising D DeBlasio, T Wheeler, J Kececioglu Research in Computational Molecular Biology, 45-59, 2012	25	2012
Adaptive protein evolution and regulatory divergence in Drosophila JM Good, CA Hayden, TJ Wheeler Molecular biology and evolution 23 (6), 1101-1103, 2006	24	2006
TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation TE Hub Consortium, TA Elliott, T Heitkam, R Hubley, H Quesneville, ... Mobile DNA 12 (1), 16, 2021	17	2021

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