Marcel H Schulz

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Martin VingronMax-Planck-Institut für molekulare GenetikVerified email at molgen.mpg.de
Peter RobinsonProfessor of Computational Biology, The Jackson Laboratory for Genomic MedicineVerified email at jax.org
Sebastian BauerVerified email at sebastianbauer.info
Florian SchmidtImmunoScapeVerified email at immunoscape.com
Sebastian KöhlerExpert Information Architect, Ada Health; Member of Monarch InitiativeVerified email at ada.com
Hugues RichardRobert Koch Institute (Researcher) / Sorbonne University (Ass. Prof., on leave)Verified email at upmc.fr
Martin SimonProfessor Molecular Cell BiologyVerified email at uni-wuppertal.de
Markus ListBig Data in BioMedicine, Chair of Experimental Bioinformatics, TUM School of Life SciencesVerified email at wzw.tum.de
Ziv Bar-JosephProfessor of Computational Biology and Machine Learning, School of Computer Science, Carnegie Mellon UniversityVerified email at andrew.cmu.edu
Karl JV NordströmAstraZeneca ABVerified email at astrazeneca.com
Dr. Marc SultanRocheVerified email at roche.com
Jörn WalterProfessor of Genetics & Epigenetics, Saarland UniveristyVerified email at mx.uni-saarland.de
Kai YeXi'an Jiaotong UniversityVerified email at xjtu.edu.cn
David WeeseD4L data4life gGmbHVerified email at data4life.care
Gilles GasparoniUniversität des SaarlandesVerified email at mx.uni-saarland.de
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
Daniel ZerbinoMosaic TherapeuticsVerified email at mosaic-tx.com
Sonja M. KesslerInstitute of Pharmacy, Experimental Pharmacology for Natural Sciences, Martin Luther UniversityVerified email at pharmazie.uni-halle.de
Sivarajan KarunanithiBioinformatician at IMB gGmbHVerified email at imb-mainz.de
Knut ReinertFU Berlin / MPI MolgenVerified email at fu-berlin.de

Marcel H Schulz

Professor of Computational Biology, Goethe University Frankfurt, Germany

Verified email at em.uni-frankfurt.de - Homepage

Epigenomics Data Science Gene Regulation Single Cell Analysis Machine Learning Computer Science


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Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads K Ye, MH Schulz, Q Long, R Apweiler, Z Ning Bioinformatics 25 (21), 2865-2871, 2009	2067	2009
Oases: Robust de novo RNA-seq assembly across the dynamic range of expression levels MH Schulz, DR Zerbino, M Vingron, E Birney Bioinformatics, 2012	1615	2012
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome M Sultan, MH Schulz, H Richard, A Magen, A Klingenhoff, M Scherf, ... Science 321 (5891), 956-960, 2008	1561	2008
Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ... Nature methods 10 (12), 1177-1184, 2013	715	2013
Clinical diagnostics in human genetics with semantic similarity searches in ontologies S Köhler, MH Schulz, P Krawitz, S Bauer, S Dölken, CE Ott, C Mundlos, ... The American Journal of Human Genetics 85 (4), 457-464, 2009	490	2009
The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery HG Stunnenberg, M Hirst, International Human Epigenome Consortium Cell 167 (5), 1145-1149, 2016	446	2016
Identification of transcription factor binding sites using ATAC-seq Z Li, MH Schulz, T Look, M Begemann, M Zenke, IG Costa Genome biology 20, 1-21, 2019	313	2019
Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments H Richard, MH Schulz, M Sultan, A Nürnberger, S Schrinner, D Balzereit, ... Nucleic Acids Research 38 (10), e112-e112, 2010	207	2010
Epigenomic Profiling of Human CD4+ T Cells Supports a Linear Differentiation Model and Highlights Molecular Regulators of Memory Development P Durek, K Nordström, G Gasparoni, A Salhab, C Kressler, M de Almeida, ... Immunity 45 (5), 1148-1161, 2016	182	2016
Mapping translocation breakpoints by next-generation sequencing W Chen, V Kalscheuer, A Tzschach, C Menzel, R Ullmann, MH Schulz, ... Genome research 18 (7), 1143-1149, 2008	170	2008
DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data MH Schulz, WE Devanny, A Gitter, S Zhong, J Ernst, Z Bar-Joseph BMC Systems Biology 6 (1), 104, 2012	136	2012
Single cell sequencing reveals endothelial plasticity with transient mesenchymal activation after myocardial infarction LS Tombor, D John, SF Glaser, G Luxán, E Forte, M Furtado, N Rosenthal, ... Nature communications 12 (1), 681, 2021	109	2021
Probabilistic error correction for RNA sequencing HS Le, MH Schulz, BM McCauley, VF Hinman, Z Bar-Joseph Nucleic acids research 41 (10), e109-e109, 2013	101	2013
Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction F Schmidt, N Gasparoni, G Gasparoni, K Gianmoena, C Cadenas, ... Nucleic acids research 45 (1), 54-66, 2017	92	2017
Fiona: a parallel and automatic strategy for read error correction MH Schulz, D Weese, M Holtgrewe, V Dimitrova, S Niu, K Reinert, ... Bioinformatics 30 (17), i356-i363, 2014	82	2014
Detecting genomic indel variants with exact breakpoints in single-and paired-end sequencing data using SplazerS AK Emde, MH Schulz, D Weese, R Sun, M Vingron, VM Kalscheuer, ... Bioinformatics, 2012	77	2012
Reconstructing dynamic microRNA-regulated interaction networks MH Schulz, KV Pandit, CL Lino Cardenas, N Ambalavanan, N Kaminski, ... Proceedings of the National Academy of Sciences 110 (39), 15686-15691, 2013	74	2013
Bayesian Ontology Querying for Accurate and Noise-Tolerant Semantic Searches S Bauer, S Köhler, MH Schulz, PN Robinson Bioinformatics, 2012	64	2012
DECOD: fast and accurate discriminative DNA motif finding P Huggins, S Zhong, I Shiff, R Beckerman, O Laptenko, C Prives, ... Bioinformatics 27 (17), 2361-2367, 2011	63	2011
Analysis of cell type-specific effects of microRNA-92a provides novel insights into target regulation and mechanism of action EM Rogg, WT Abplanalp, C Bischof, D John, MH Schulz, J Krishnan, ... Circulation 138 (22), 2545-2558, 2018	61	2018

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