Rory Johnson
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An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
93342012
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101-108, 2012
37972012
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ...
Genome research 22 (9), 1775-1789, 2012
36112012
The human transcriptome across tissues and individuals
M Melé, PG Ferreira, F Reverter, DS DeLuca, J Monlong, M Sammeth, ...
Science 348 (6235), 660-665, 2015
8082015
GENCODE reference annotation for the human and mouse genomes
A Frankish, M Diekhans, AM Ferreira, R Johnson, I Jungreis, J Loveland, ...
Nucleic acids research 47 (D1), D766-D773, 2019
6012019
Human long non‐coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors
SY Ng, R Johnson, LW Stanton
The EMBO journal 31 (3), 522-533, 2012
4572012
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
H Tilgner, DG Knowles, R Johnson, CA Davis, S Chakrabortty, S Djebali, ...
Genome research 22 (9), 1616-1625, 2012
3882012
A microRNA-based gene dysregulation pathway in Huntington's disease
R Johnson, C Zuccato, ND Belyaev, DJ Guest, E Cattaneo, NJ Buckley
Neurobiology of disease 29 (3), 438-445, 2008
3522008
Genome-wide computational identification and manual annotation of human long noncoding RNA genes
H Jia, M Osak, GK Bogu, LW Stanton, R Johnson, L Lipovich
Rna 16 (8), 1478-1487, 2010
3412010
Long non-coding RNAs in Huntington's disease neurodegeneration
R Johnson
Neurobiology of disease 46 (2), 245-254, 2012
3112012
MacroRNA underdogs in a microRNA world: evolutionary, regulatory, and biomedical significance of mammalian long non-protein-coding RNA
L Lipovich, R Johnson, CY Lin
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1799 (9), 597-615, 2010
2192010
Genome-wide profiling of the cardiac transcriptome after myocardial infarction identifies novel heart-specific long non-coding RNAs
S Ounzain, R Micheletti, T Beckmann, B Schroen, M Alexanian, I Pezzuto, ...
European heart journal 36 (6), 353-368, 2015
2132015
Pan-cancer analysis of whole genomes
I The, TPCA of Whole, Genomes Consortium
Nature 578 (7793), 82, 2020
2092020
The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs
R Johnson, R Guigó
Rna 20 (7), 959-976, 2014
1962014
REST regulates distinct transcriptional networks in embryonic and neural stem cells
R Johnson, CH Teh, G Kunarso, KY Wong, G Srinivasan, ML Cooper, ...
PLoS Biol 6 (10), e256, 2008
1962008
Distinct profiles of REST interactions with its target genes at different stages of neuronal development
YM Sun, DJ Greenway, R Johnson, M Street, ND Belyaev, J Deuchars, ...
Molecular biology of the cell 16 (12), 5630-5638, 2005
1822005
Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia
PG Ferreira, P Jares, D Rico, G Gómez-López, A Martínez-Trillos, ...
Genome research 24 (2), 212-226, 2014
1772014
Towards a complete map of the human long non-coding RNA transcriptome
B Uszczynska-Ratajczak, J Lagarde, A Frankish, R Guigó, R Johnson
Nature Reviews Genetics 19 (9), 535-548, 2018
1582018
CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis
S Ounzain, R Micheletti, C Arnan, I Plaisance, D Cecchi, B Schroen, ...
Journal of molecular and cellular cardiology 89, 98-112, 2015
1412015
Identification of the REST regulon reveals extensive transposable element-mediated binding site duplication
R Johnson, RJ Gamblin, L Ooi, AW Bruce, IJ Donaldson, DR Westhead, ...
Nucleic acids research 34 (14), 3862-3877, 2006
1352006
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