Martin Weigt

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Andrea PagnaniProfessor at DISAT - Politecnico di Torino, and PI at the IIGMVerified email at polito.it
Riccardo Zecchinaprofessor, theoretical physics, Bocconi UniversityVerified email at unibocconi.it
Alexander K. HartmannProfessor of Physics, University of OldenburgVerified email at uol.de
Terence HwaDistinguished Professor and Presidential Chair, U.C. San DiegoVerified email at ucsd.edu
Remi MonassonCNRS & Ecole Normale SupérieureVerified email at lpt.ens.fr
Simona CoccoVerified email at lps.ens.fr
Alexander SchugNIC Group Leader FZ Jülich, Prof. University of Duisburg-EssenVerified email at fz-juelich.de
Jose OnuchicCTBP Rice UniversityVerified email at rice.edu
Bryan J. LuntPhD Candidate, University of Illinois as Urbana-ChampaignVerified email at illinois.edu
matteo figliuzziUniversite Pierre & Marie CurieVerified email at upmc.fr
Christoph FeinauerIsomorphic LabsVerified email at isomorphiclabs.com
Pierre Barrat-CharlaixUniversität BaselVerified email at unibas.ch
Faruck MorcosUniversity of Texas at Dallas - Dept. Biological SciencesVerified email at utdallas.edu
Francesco ZamponiSapienza Università di RomaVerified email at uniroma1.it
Alfredo BraunsteinDISAT, Politecnico di TorinoVerified email at polito.it
Chris SanderHarvard Medical School, Broad Institute, Dana-Farber Cancer Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Debora MarksSystems Biology, Harvard Medical School, Broad Institute of Harvard and MITVerified email at hms.harvard.edu
Federico Ricci-TersenghiProfessor of Theoretical Physics, "La Sapienza" University, RomaVerified email at roma1.infn.it
Robert WhiteProfessor of Physics Butte CollegeVerified email at butte.edu
Olivier TenaillonInstitut Cochin, Université Paris Cité, Inserm, CNRS , Professor Ecole PolytechniqueVerified email at inserm.fr

Martin Weigt

Sorbonne Université Paris (former Université Pierre & Marie Curie)

Verified email at upmc.fr - Homepage

computational biology statistical physics biological physics statistical inference quantitative biology


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Direct-coupling analysis of residue coevolution captures native contacts across many protein families F Morcos, A Pagnani, B Lunt, A Bertolino, DS Marks, C Sander, ... Proceedings of the National Academy of Sciences 108 (49), E1293-E1301, 2011	1573	2011
On the properties of small-world network models A Barrat, M Weigt The European Physical Journal B-Condensed Matter and Complex Systems 13, 547-560, 2000	1274	2000
Identification of direct residue contacts in protein–protein interaction by message passing M Weigt, RA White, H Szurmant, JA Hoch, T Hwa Proceedings of the National Academy of Sciences 106 (1), 67-72, 2009	1216	2009
Improved contact prediction in proteins: using pseudolikelihoods to infer Potts models M Ekeberg, C Lövkvist, Y Lan, M Weigt, E Aurell Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 87 (1 …, 2013	755	2013
Phase transitions in combinatorial optimization problems: basics, algorithms and statistical mechanics AK Hartmann, M Weigt John Wiley & Sons, 2006	372	2006
An evolution-based model for designing chorismate mutase enzymes WP Russ, M Figliuzzi, C Stocker, P Barrat-Charlaix, M Socolich, P Kast, ... Science 369 (6502), 440-445, 2020	289	2020
Coevolutionary landscape inference and the context-dependence of mutations in beta-lactamase TEM-1 M Figliuzzi, H Jacquier, A Schug, O Tenaillon, M Weigt Molecular biology and evolution 33 (1), 268-280, 2016	285	2016
Inverse statistical physics of protein sequences: a key issues review S Cocco, C Feinauer, M Figliuzzi, R Monasson, M Weigt Reports on Progress in Physics 81 (3), 032601, 2018	265	2018
Genomics-aided structure prediction JI Sułkowska, F Morcos, M Weigt, T Hwa, JN Onuchic Proceedings of the National Academy of Sciences 109 (26), 10340-10345, 2012	259	2012
Coloring random graphs R Mulet, A Pagnani, M Weigt, R Zecchina Physical review letters 89 (26), 268701, 2002	249	2002
High-resolution protein complexes from integrating genomic information with molecular simulation A Schug, M Weigt, JN Onuchic, T Hwa, H Szurmant Proceedings of the National Academy of Sciences 106 (52), 22124-22129, 2009	212	2009
Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis AE Dago, A Schug, A Procaccini, JA Hoch, M Weigt, H Szurmant Proceedings of the National Academy of Sciences 109 (26), E1733-E1742, 2012	200	2012
Notch ligand delta-like 4 blockade attenuates atherosclerosis and metabolic disorders D Fukuda, E Aikawa, FK Swirski, TI Novobrantseva, V Kotelianski, ... Proceedings of the national Academy of Sciences 109 (27), E1868-E1877, 2012	196	2012
Fast and accurate multivariate Gaussian modeling of protein families: predicting residue contacts and protein-interaction partners C Baldassi, M Zamparo, C Feinauer, A Procaccini, R Zecchina, M Weigt, ... PloS one 9 (3), e92721, 2014	178	2014
Clustering by soft-constraint affinity propagation: applications to gene-expression data M Leone, Sumedha, M Weigt Bioinformatics 23 (20), 2708-2715, 2007	178	2007
A variational description of the ground state structure in random satisfiability problems G Biroli, R Monasson, M Weigt The European Physical Journal B-Condensed Matter and Complex Systems 14 (3 …, 2000	177	2000
Perturbation biology: inferring signaling networks in cellular systems EJ Molinelli, A Korkut, W Wang, ML Miller, NP Gauthier, X Jing, P Kaushik, ... PLoS computational biology 9 (12), e1003290, 2013	172	2013
Number of guards needed by a museum: A phase transition in vertex covering of random graphs M Weigt, AK Hartmann Physical review letters 84 (26), 6118, 2000	165	2000
From principal component to direct coupling analysis of coevolution in proteins: Low-eigenvalue modes are needed for structure prediction S Cocco, R Monasson, M Weigt PLoS computational biology 9 (8), e1003176, 2013	155	2013
Simplest random K-satisfiability problem F Ricci-Tersenghi, M Weigt, R Zecchina Physical Review E 63 (2), 026702, 2001	142	2001

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