Filippo Utro
Filippo Utro
Computational Biology Center - IBM T.J. Watson Research
Adresse e-mail validée de us.ibm.com - Page d'accueil
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Genetic inactivation of the polycomb repressive complex 2 in T cell acute lymphoblastic leukemia
P Ntziachristos, A Tsirigos, P Van Vlierberghe, J Nedjic, T Trimarchi, ...
Nature medicine 18 (2), 298-302, 2012
4372012
The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color
JC Motamayor, K Mockaitis, J Schmutz, N Haiminen, D Livingstone III, ...
Genome biology 14 (6), 1-25, 2013
2062013
Textual data compression in computational biology: a synopsis
R Giancarlo, D Scaturro, F Utro
Bioinformatics 25 (13), 1575-1586, 2009
1252009
Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers
AR Parikh, I Leshchiner, L Elagina, L Goyal, C Levovitz, G Siravegna, ...
Nature medicine 25 (9), 1415-1421, 2019
852019
Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer
R Giancarlo, D Scaturro, F Utro
BMC bioinformatics 9 (1), 1-19, 2008
672008
Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies
R Giancarlo, SE Rombo, F Utro
Briefings in bioinformatics 15 (3), 390-406, 2014
512014
Enhancing next‐generation sequencing‐guided cancer care through cognitive computing
NM Patel, VV Michelini, JM Snell, S Balu, AP Hoyle, JS Parker, ...
The oncologist 23 (2), 179, 2018
502018
GenomicTools: a computational platform for developing high-throughput analytics in genomics
A Tsirigos, N Haiminen, E Bilal, F Utro
Bioinformatics 28 (2), 282-283, 2012
422012
Comparing sequencing assays and human-machine analyses in actionable genomics for glioblastoma
KO Wrzeszczynski, MO Frank, T Koyama, K Rhrissorrakrai, N Robine, ...
Neurology Genetics 3 (4), 2017
312017
Epigenomic k-mer dictionaries: shedding light on how sequence composition influences in vivo nucleosome positioning
R Giancarlo, SE Rombo, F Utro
Bioinformatics 31 (18), 2939-2946, 2015
252015
Textual data compression in computational biology: Algorithmic techniques
R Giancarlo, D Scaturro, F Utro
Computer Science Review 6 (1), 1-25, 2012
212012
Algorithmic paradigms for stability-based cluster validity and model selection statistical methods, with applications to microarray data analysis
R Giancarlo, F Utro
Theoretical Computer Science 428, 58-79, 2012
202012
Speeding up the Consensus Clustering methodology for microarray data analysis
R Giancarlo, F Utro
Algorithms for Molecular Biology 6 (1), 1-13, 2011
202011
The three steps of clustering in the post-genomic era: a synopsis
R Giancarlo, GL Bosco, L Pinello, F Utro
International Meeting on Computational Intelligence Methods for …, 2010
172010
A basic analysis toolkit for biological sequences
R Giancarlo, A Siragusa, E Siragusa, F Utro
Algorithms for Molecular Biology 2 (1), 1-16, 2007
132007
The Intrinsic Combinatorial Organization and Information Theoretic Content of a Sequence Are Correlated to the DNA Encoded Nucleosome Organization of Eukaryotic Genomes
F Utro, V Di Benedetto, DFV Corona, R Giancarlo
Bioinformatics, btv679, 2015
122015
Comparative exomics of Phalaris cultivars under salt stress
N Haiminen, M Klaas, Z Zhou, F Utro, P Cormican, T Didion, CS Jensen, ...
BMC genomics 15 (6), 1-12, 2014
102014
iXora: Exact haplotype inferencing and trait association
F Utro, N Haiminen, D Livingstone Iii, O Cornejo, S Royaert, R Schnell, ...
BMC Genetics 14 (1), 2013
102013
IRiS: construction of ARG networks at genomic scales
A Javed, M Pybus, M Melé, F Utro, J Bertranpetit, F Calafell, L Parida
Bioinformatics 27 (17), 2448-2450, 2011
102011
A tutorial on computational cluster analysis with applications to pattern discovery in microarray data
R Giancarlo, D Scaturro, F Utro
Mathematics in Computer Science 1 (4), 655-672, 2008
102008
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