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David La
David La
Adresse e-mail validée de uw.edu
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Fast protein tertiary structure retrieval based on global surface shape similarity
L Sael, B Li, D La, Y Fang, K Ramani, R Rustamov, D Kihara
Proteins: Structure, Function, and Bioinformatics 72 (4), 1259-1273, 2008
1472008
Characterization of local geometry of protein surfaces with the visibility criterion
B Li, S Turuvekere, M Agrawal, D La, K Ramani, D Kihara
Proteins: Structure, Function, and Bioinformatics 71 (2), 670-683, 2008
1052008
Rapid comparison of properties on protein surface
L Sael, D La, B Li, R Rustamov, D Kihara
Proteins: Structure, function, and bioinformatics 73 (1), 1-10, 2008
992008
3D-SURFER: software for high-throughput protein surface comparison and analysis
D La, J Esquivel-Rodríguez, V Venkatraman, B Li, L Sael, S Ueng, ...
Bioinformatics 25 (21), 2843-2844, 2009
892009
Predicting protein functional sites with phylogenetic motifs
D La, B Sutch, DR Livesay
Proteins: Structure, Function, and Bioinformatics 58 (2), 309-320, 2005
852005
Predicting permanent and transient protein–protein interfaces
D La, M Kong, W Hoffman, YI Choi, D Kihara
Proteins: Structure, Function, and Bioinformatics 81 (5), 805-818, 2013
632013
Next generation sequencing of the hepatitis C virus NS5B gene reveals potential novel S282 drug resistance mutations
H Ji, RA Kozak, MJ Biondi, R Pilon, D Vallee, BB Liang, D La, J Kim, ...
Virology 477, 1-9, 2015
472015
The evolutionary origins and catalytic importance of conserved electrostatic networks within TIM‐barrel proteins
DR Livesay, D La
Protein science 14 (5), 1158-1170, 2005
432005
N-Terminal Gly224–Gly411 Domain in Listeria Adhesion Protein Interacts with Host Receptor Hsp60
B Jagadeesan, AE Fleishman Littlejohn, MAR Amalaradjou, AK Singh, ...
PloS one 6 (6), e20694, 2011
402011
A novel method for protein–protein interaction site prediction using phylogenetic substitution models
D La, D Kihara
Proteins: Structure, Function, and Bioinformatics 80 (1), 126-141, 2012
322012
Predicting functional sites with an automated algorithm suitable for heterogeneous datasets
D La, DR Livesay
BMC bioinformatics 6, 1-12, 2005
292005
Using motif-based methods in multiple genome analyses: a case study comparing orthologous mesophilic and thermophilic proteins
D La, M Silver, RC Edgar, DR Livesay
Biochemistry 42 (30), 8988-8998, 2003
292003
MINER: software for phylogenetic motif identification
D La, DR Livesay
Nucleic acids research 33 (suppl_2), W267-W270, 2005
252005
Improved phylogenetic motif detection using parsimony
U Roshan, DR Livesay, D La
Fifth IEEE Symposium on Bioinformatics and Bioengineering (BIBE'05), 19-26, 2005
82005
BindML/BindML+: Detecting protein-protein interaction interface propensity from amino acid substitution patterns
Q Wei, D La, D Kihara
Computational Protein Design, 279-289, 2017
72017
Predicting protein functional sites with phylogenetic motifs: past, present and beyond
DR Livesay, DB Kc, D La
Protein Function Prediction for Omics Era, 93-105, 2011
12011
KIR3DL1 Alleles and Their Epistatic Interactions with HLA Class I in Resistance and Susceptibility to HIV Infection in the Pumwani Sex Worker Cohort
M Luo, C Czarnecki, M Nebroski, D La, J Kimani, F Plummer
AIDS RESEARCH AND HUMAN RETROVIRUSES 32, 206-206, 2016
2016
A Preliminary Analysis of HIV-1 Escape Mutations in Subtype A1 Virus and Impact on Disease Progression Rates
E Shadabi, B Liang, J Carlson, R Sampathkumar, J Ho, D La, R Capina, ...
AIDS RESEARCH AND HUMAN RETROVIRUSES 32, 274-274, 2016
2016
Next generation sequencing of the hepatitis C virus NS5B gene reveals potential novel S282 drug resistance mutations.
JHZ Ji HeZhao, RA Kozak, MJ Biondi, R Pilon, D Vallee, BB Liang, D La, ...
2015
ORAL PRESENTATION Open Access
R Sampathkumar, E Shadabi, D La, J Ho, B Liang, J Kimani, FA Plummer, ...
2014
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Articles 1–20