Suivre
Nicholas Keller
Nicholas Keller
Adresse e-mail validée de physics.ucsd.edu
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Année
Nonequilibrium dynamics and ultraslow relaxation of confined DNA during viral packaging
ZT Berndsen, N Keller, S Grimes, PJ Jardine, DE Smith
Proceedings of the National Academy of Sciences 111 (23), 8345-8350, 2014
932014
Walker-A motif acts to coordinate ATP hydrolysis with motor output in viral DNA packaging
D Ortiz, M Ordyan, J Sippy, CS Oh, N Keller, M Feiss, CE Catalano, ...
Journal of molecular biology 428 (13), 2709-2729, 2016
442016
Repulsive DNA-DNA interactions accelerate viral DNA packaging in phage phi29
N Keller, S Grimes, PJ Jardine, DE Smith
Physical review letters 112 (24), 248101, 2014
432014
Single DNA molecule jamming and history-dependent dynamics during motor-driven viral packaging
N Keller, S Grimes, PJ Jardine, DE Smith
Nature physics 12 (8), 757-761, 2016
272016
Towards data-driven simulation modeling for mobile agent-based systems
N Keller, X Hu
ACM Transactions on Modeling and Computer Simulation (TOMACS) 29 (1), 1-26, 2019
262019
Evidence for an electrostatic mechanism of force generation by the bacteriophage T4 DNA packaging motor
AD Migliori, N Keller, TI Alam, M Mahalingam, VB Rao, G Arya, DE Smith
Nature Communications 5 (1), 4173, 2014
262014
Continuous allosteric regulation of a viral packaging motor by a sensor that detects the density and conformation of packaged DNA
ZT Berndsen, N Keller, DE Smith
Biophysical journal 108 (2), 315-324, 2015
252015
Single-molecule measurements of motor-driven viral DNA packaging in bacteriophages Phi29, Lambda, and T4 with optical tweezers
N Keller, DJ delToro, DE Smith
Molecular Motors: Methods and Protocols, 393-422, 2018
122018
Experimental comparison of forces resisting viral DNA packaging and driving DNA ejection
N Keller, ZT Berndsen, PJ Jardine, DE Smith
Physical Review E 95 (5), 052408, 2017
92017
D. delToro, S. Grimes, PJ Jardine, and DE Smith
N Keller
Phys. Rev. Lett 112, 248101, 2014
92014
Agent-based modeling and simulation of child maltreatment and child maltreatment prevention
X Hu, N Keller
Journal of Artificial Societies and Social Simulation 18 (3), 6, 2015
72015
Function of a viral genome packaging motor from bacteriophage T4 is insensitive to DNA sequence
Y Mo, N Keller, D delToro, N Ananthaswamy, SC Harvey, VB Rao, ...
Nucleic acids research 48 (20), 11602-11614, 2020
32020
Parent training resource allocation optimization using an agent-based model of child maltreatment
N Keller, X Hu
International Conference on Social Computing, Behavioral-Cultural Modeling …, 2013
12013
Single Molecule Studies of the Effect of Spermidine on DNA Mechanics and Viral DNA Packaging
NA Keller, DE Smith
Biophysical Journal 102 (3), 274a, 2012
12012
Role of DNA–DNA sliding friction and nonequilibrium dynamics in viral genome ejection and packaging
M Fizari, N Keller, PJ Jardine, DE Smith
Nucleic acids research 51 (15), 8060-8069, 2023
2023
Restricted Mobility and Jamming of Densely Packed DNA Pulled Out from Phage Phi29 Virus Capsids
M Fizari, NA Keller, DE Smith
Biophysical Journal 120 (3), 221a, 2021
2021
Restricted mobility and jamming of densely packed DNA exiting a viral capsid
M Fizari, N Keller, D Smith
APS March Meeting Abstracts 2021, X14. 004, 2021
2021
High GC Content DNA does not Affect Phage T4 DNA Packaging--Test of a Scrunchworm Model for Packaging Motor Function
Y Mo, NA Keller, DE Smith
Biophysical Journal 118 (3), 188a, 2020
2020
NEW BUSINESS
D Belcher, L Berman, G Bingham, C Bohan, M Brinton, F Brooks, ...
2014
Evidence for non-equilibrium dynamics in viral DNA packaging from optical tweezers measurements
ZT Berndsen, N Keller, DE Smith
Optical Trapping and Optical Micromanipulation X 8810, 419-428, 2013
2013
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