Tulio de Oliveira
Tulio de Oliveira
KRISP, UKZN
Verified email at ukzn.ac.za - Homepage
Title
Cited by
Cited by
Year
An automated genotyping system for analysis of HIV-1 and other microbial sequences
T De Oliveira, K Deforche, S Cassol, M Salminen, D Paraskevis, ...
Bioinformatics 21 (19), 3797-3800, 2005
5402005
Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa
H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ...
medRxiv, 2020
4212020
SARS-CoV-2 501Y. V2 escapes neutralization by South African COVID-19 donor plasma
CK Wibmer, F Ayres, T Hermanus, M Madzivhandila, P Kgagudi, ...
Nature medicine 27 (4), 622-625, 2021
3012021
Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools
AC Pineda-Peña, NR Faria, S Imbrechts, P Libin, AB Abecasis, ...
Infection, genetics and evolution 19, 337-348, 2013
2522013
HIV-1 drug resistance before initiation or re-initiation of first-line antiretroviral therapy in low-income and middle-income countries: a systematic review and meta-regression …
RK Gupta, J Gregson, N Parkin, H Haile-Selassie, A Tanuri, LA Forero, ...
The Lancet infectious diseases 18 (3), 346-355, 2018
2272018
Renewing Felsenstein’s phylogenetic bootstrap in the era of big data
F Lemoine, JBD Entfellner, E Wilkinson, D Correia, MD Felipe, ...
Nature 556 (7702), 452-456, 2018
1972018
Transmission networks and risk of HIV infection in KwaZulu-Natal, South Africa: a community-wide phylogenetic study
T De Oliveira, ABM Kharsany, T Gräf, C Cawood, D Khanyile, A Grobler, ...
The lancet HIV 4 (1), e41-e50, 2017
1952017
Global epidemiology of drug resistance after failure of WHO recommended first-line regimens for adult HIV-1 infection: a multicentre retrospective cohort study
J Gregson, M Tang, N Ndembi, RL Hamers, SY Rhee, VC Marconi, ...
The Lancet infectious diseases 16 (5), 565-575, 2016
1902016
Genomic and epidemiological monitoring of yellow fever virus transmission potential
NR Faria, MUG Kraemer, SC Hill, JG De Jesus, RS Aguiar, FCM Iani, ...
Science 361 (6405), 894-899, 2018
1852018
Efficacy of the ChAdOx1 nCoV-19 Covid-19 vaccine against the B. 1.351 variant
SA Madhi, V Baillie, CL Cutland, M Voysey, AL Koen, L Fairlie, ...
New England Journal of Medicine 384 (20), 1885-1898, 2021
1692021
A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences
LCJ Alcantara, S Cassol, P Libin, K Deforche, OG Pybus, M Van Ranst, ...
Nucleic acids research 37 (suppl_2), W634-W642, 2009
1692009
Universal test and treat and the HIV epidemic in rural South Africa: a phase 4, open-label, community cluster randomised trial
CC Iwuji, J Orne-Gliemann, J Larmarange, E Balestre, R Thiebaut, ...
The lancet HIV 5 (3), e116-e125, 2018
1632018
Spread of yellow fever virus outbreak in Angola and the Democratic Republic of the Congo 2015–16: a modelling study
MUG Kraemer, NR Faria, RC Reiner Jr, N Golding, B Nikolay, S Stasse, ...
The Lancet infectious diseases 17 (3), 330-338, 2017
1622017
HIV-1 and HCV sequences from Libyan outbreak
T De Oliveira, OG Pybus, A Rambaut, M Salemi, S Cassol, M Ciccozzi, ...
Nature 444 (7121), 836-837, 2006
1622006
Molecular cloning and functional analysis of three type D endogenous retroviruses of sheep reveal a different cell tropism from that of the highly related exogenous jaagsiekte …
M Palmarini, C Hallwirth, D York, C Murgia, T De Oliveira, T Spencer, ...
Journal of Virology 74 (17), 8065-8076, 2000
1572000
Escape of SARS-CoV-2 501Y. V2 from neutralization by convalescent plasma
S Cele, I Gazy, L Jackson, SH Hwa, H Tegally, G Lustig, J Giandhari, ...
Nature 593 (7857), 142-146, 2021
1562021
Microbial genome-wide association studies: lessons from human GWAS
RA Power, J Parkhill, T de Oliveira
Nature reviews genetics 18 (1), 41, 2017
1552017
A specific subtype C of human immunodeficiency virus type 1 circulates in Brazil
MA Soares, T De Oliveira, RM Brindeiro, RS Diaz, EC Sabino, L Brigido, ...
Aids 17 (1), 11-21, 2003
1352003
A predominantly HIV type 1 subtype C-restricted epidemic in South African urban populations
JHV Harmelen, EVD Ryst, AS Loubser, D York, S Madurai, S Lyons, ...
AIDS research and human retroviruses 15 (4), 395-398, 1999
1341999
Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form
AB Abecasis, P Lemey, N Vidal, T de Oliveira, M Peeters, R Camacho, ...
Journal of virology 81 (16), 8543-8551, 2007
1252007
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Articles 1–20