Mélina Gallopin
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Data-based filtering for replicated high-throughput transcriptome sequencing experiments
A Rau, M Gallopin, G Celeux, F Jaffrézic
Bioinformatics 29 (17), 2146-2152, 2013
Block-diagonal covariance selection for high-dimensional Gaussian graphical models
E Devijver, M Gallopin
Journal of the American Statistical Association 113 (521), 306-314, 2018
A hierarchical poisson log-normal model for network inference from rna sequencing data
M Gallopin, A Rau, F Jaffrézic
PloS one 8 (10), e77503, 2013
DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
J Audoux, N Philippe, R Chikhi, M Salson, M Gallopin, M Gabriel, ...
Genome biology 18, 1-15, 2017
Reference-free transcriptome exploration reveals novel RNAs for prostate cancer diagnosis
M Pinskaya, Z Saci, M Gallopin, M Gabriel, HTN Nguyen, V Firlej, ...
Life science alliance 2 (6), 2019
The X-ray fluorescence screening of multiple elements in herbarium specimens from the Neotropical region reveals new records of metal accumulation in plants
C Belloeil, P Jouannais, C Malfaisan, R Reyes Fernández, S Lopez, ...
Metallomics 13 (8), mfab045, 2021
Nonlinear network-based quantitative trait prediction from transcriptomic data
E Devijver, M Gallopin, E Perthame
arXiv preprint arXiv:1701.07899, 2017
Reference-free transcriptome signatures for prostate cancer prognosis
HTN Nguyen, H Xue, V Firlej, Y Ponty, M Gallopin, D Gautheret
BMC cancer 21, 1-12, 2021
A Phylogenetic Framework to Simulate Synthetic Interspecies RNA-Seq Data
P Bastide, C Soneson, DB Stern, O Lespinet, M Gallopin
Molecular Biology and Evolution 40 (1), msac269, 2023
Classification et inférence de réseaux pour les données RNA-seq
M Gallopin
Université Paris Saclay (COmUE), 2015
A model selection criterion for model-based clustering of annotated gene expression data.
M Gallopin, G Celeux, F Jaffrézic, A Rau
Statistical Applications in Genetics and Molecular Biology 14 (5), 413-2, 2015
The contribution of uncharted RNA sequences to tumor identity in lung adenocarcinoma
Y Wang, H Xue, M Aglave, A Lainé, M Gallopin, D Gautheret
NAR cancer 4 (1), zcac001, 2022
Additional insights into the organization of transcriptional regulatory modules based on a 3D model of the Saccharomyces cerevisiae genome
T Poinsignon, M Gallopin, JM Camadro, P Poulain, G Lelandais
BMC Research Notes 15 (1), 67, 2022
Working with Omics Data: An Interdisciplinary Challenge at the Crossroads of Biology and Computer Science
T Poinsignon, P Poulain, M Gallopin, G Lelandais
Machine Learning for Brain Disorders, 313-330, 2023
Detection of orthologous genes with expression shifts linked to nickel hyperaccumulation across Eudicots
M Gallopin, C Drevet, VSG de la Torre, S Jelassi, M Michel, C Ducos, ...
bioRxiv, 2022.09. 28.509953, 2022
Benchmark of Differential Gene Expression Analysis Methods for Inter-species RNA-Seq Data using a Phylogenetic Simulation Framework
P Bastide, C Soneson, O Lespinet, M Gallopin
bioRxiv, 2022.01. 21.476612, 2022
Transformation des données et comparaison de modèles pour la classification des données RNA-seq
M Gallopin, A Rau, G Celeux, F Jaffrezic
47emes Journées de Statistique de la SFdS, 2015
Nonlinear network-based quantitative trait prediction from biological data
M Blein-Nicolas, E Devijver, M Gallopin, E Perthame
Journal of the Royal Statistical Society Series C: Applied Statistics, qlae012, 2024
3D models of fungal chromosomes to enhance visual integration of omics data
T Poinsignon, M Gallopin, P Grognet, F Malagnac, G Lelandais, P Poulain
NAR Genomics and Bioinformatics 5 (4), lqad104, 2023
3D modeling of Hi-C contacts: seeing the spatial organization of fungal chromosomes
T Poinsignon, M Gallopin, P Grognet, F Malagnac, G Lelandais, P Poulain
16th European Conference on Fungal Genetics, 2023
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