AJ Rader
AJ Rader
Director of Data Scientist at DMC Insurance
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Protein flexibility predictions using graph theory
DJ Jacobs, AJ Rader, LA Kuhn, MF Thorpe
Proteins: Structure, Function, and Bioinformatics 44 (2), 150-165, 2001
Coarse-grained normal mode analysis in structural biology
I Bahar, AJ Rader
Current opinion in structural biology 15 (5), 586-592, 2005
Protein unfolding: rigidity lost
AJ Rader, BM Hespenheide, LA Kuhn, MF Thorpe
Proceedings of the National Academy of Sciences 99 (6), 3540-3545, 2002
Global ribosome motions revealed with elastic network model
Y Wang, AJ Rader, I Bahar, RL Jernigan
Journal of structural biology 147 (3), 302-314, 2004
Elastic network models for understanding biomolecular machinery: from enzymes to supramolecular assemblies
C Chennubhotla, AJ Rader, LW Yang, I Bahar
Physical biology 2 (4), S173, 2005
Identification of core amino acids stabilizing rhodopsin
AJ Rader, G Anderson, B Isin, HG Khorana, I Bahar, J Klein-Seetharaman
Proceedings of the National Academy of Sciences 101 (19), 7246-7251, 2004
Identifying protein folding cores from the evolution of flexible regions during unfolding
BM Hespenheide, AJ Rader, MF Thorpe, LA Kuhn
Journal of Molecular Graphics and Modelling 21 (3), 195-207, 2002
Protein flexibility and dynamics using constraint theory
MF Thorpe, M Lei, AJ Rader, DJ Jacobs, LA Kuhn
Journal of Molecular Graphics and Modelling 19 (1), 60-69, 2001
o GNM: online computation of structural dynamics using the Gaussian Network Model
LW Yang, AJ Rader, X Liu, CJ Jursa, SC Chen, HA Karimi, I Bahar
Nucleic acids research 34 (suppl_2), W24-W31, 2006
iGNM: a database of protein functional motions based on Gaussian Network Model
LW Yang, X Liu, CJ Jursa, M Holliman, AJ Rader, HA Karimi, I Bahar
Bioinformatics 21 (13), 2978-2987, 2005
Endoglucanases: insights into thermostability for biofuel applications
RM Yennamalli, AJ Rader, AJ Kenny, JD Wolt, TZ Sen
Biotechnology for biofuels 6 (1), 1-9, 2013
Maturation dynamics of bacteriophage HK97 capsid
AJ Rader, DH Vlad, I Bahar
Structure 13 (3), 413-421, 2005
Folding core predictions from network models of proteins
AJ Rader, I Bahar
Polymer 45 (2), 659-668, 2004
Generic rigidity of network glasses
MF Thorpe, DJ Jacobs, NV Chubynsky, AJ Rader
Rigidity theory and applications, 239-277, 2002
The Gaussian network model: Theory and applications
AJ Rader, C Chennubhotla, LW Yang, I Bahar
Normal mode analysis, 65-88, 2005
Thermostability in endoglucanases is fold-specific
RM Yennamalli, AJ Rader, JD Wolt, TZ Sen
BMC structural biology 11 (1), 1-15, 2011
Thermostability in rubredoxin and its relationship to mechanical rigidity
AJ Rader
Physical Biology 7 (1), 016002, 2009
Correlating allostery with rigidity
AJ Rader, SM Brown
Molecular bioSystems 7 (2), 464-471, 2011
Predisposition of the dark state of rhodopsin to functional changes in structure
B Isin, AJ Rader, HK Dhiman, J Klein‐Seetharaman, I Bahar
PROTEINS: Structure, Function, and Bioinformatics 65 (4), 970-983, 2006
Coarse-grained models: getting more with less
AJ Rader
Current opinion in pharmacology 10 (6), 753-759, 2010
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