Roger Pique-Regi
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DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines
JT Bell, AA Pai, JK Pickrell, DJ Gaffney, R Pique-Regi, JF Degner, Y Gilad, ...
Genome biology 12 (1), R10, 2011
7792011
DNase I sensitivity QTLs are a major determinant of human expression variation
JF Degner, AA Pai, R Pique-Regi, JB Veyrieras, DJ Gaffney, JK Pickrell, ...
Nature 482 (7385), 390-394, 2012
5922012
Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
R Pique-Regi, JF Degner, AA Pai, DJ Gaffney, Y Gilad, JK Pritchard
Genome research 21 (3), 447-455, 2011
5282011
DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina
JM Zullo, IA Demarco, R Piqué-Regi, DJ Gaffney, CB Epstein, CJ Spooner, ...
Cell 149 (7), 1474-1487, 2012
3632012
Prognostic significance of gene expression profiles of metastatic neuroblastomas lacking MYCN gene amplification
S Asgharzadeh, R Pique-Regi, R Sposto, H Wang, Y Yang, H Shimada, ...
Journal of the National Cancer Institute 98 (17), 1193-1203, 2006
2142006
Genetic ancestry and natural selection drive population differences in immune responses to pathogens
Y Nédélec, J Sanz, G Baharian, ZA Szpiech, A Pacis, A Dumaine, ...
Cell 167 (3), 657-669. e21, 2016
2022016
Dissecting the regulatory architecture of gene expression QTLs
DJ Gaffney, JB Veyrieras, JF Degner, PR Roger, AA Pai, GE Crawford, ...
Genome Biology 13 (1), R7, 2012
1962012
Sparse representation and Bayesian detection of genome copy number alterations from microarray data
R Pique-Regi, J Monso-Varona, A Ortega, RC Seeger, TJ Triche, ...
Bioinformatics 24 (3), 309-318, 2008
1512008
Clinical significance of tumor-associated inflammatory cells in metastatic neuroblastoma
S Asgharzadeh, JA Salo, L Ji, A Oberthuer, M Fischer, F Berthold, ...
Journal of Clinical Oncology 30 (28), 3525, 2012
1502012
Bacterial infection remodels the DNA methylation landscape of human dendritic cells
A Pacis, L Tailleux, AM Morin, J Lambourne, JL MacIsaac, V Yotova, ...
Genome research 25 (12), 1801-1811, 2015
1272015
Social status alters immune regulation and response to infection in macaques
N Snyder-Mackler, J Sanz, JN Kohn, JF Brinkworth, S Morrow, AO Shaver, ...
Science 354 (6315), 1041-1045, 2016
1162016
Integrating molecular QTL data into genome-wide genetic association analysis: Probabilistic assessment of enrichment and colocalization
X Wen, R Pique-Regi, F Luca
PLoS genetics 13 (3), e1006646, 2017
762017
QuASAR: quantitative allele-specific analysis of reads
CT Harvey, GA Moyerbrailean, GO Davis, X Wen, F Luca, R Pique-Regi
Bioinformatics 31 (8), 1235-1242, 2015
662015
Deconstructing adipogenesis induced by β3-adrenergic receptor activation with single-cell expression profiling
RB Burl, VD Ramseyer, EA Rondini, R Pique-Regi, YH Lee, ...
Cell metabolism 28 (2), 300-309. e4, 2018
622018
A fast and accurate method to detect allelic genomic imbalances underlying mosaic rearrangements using SNP array data
JR González, B Rodríguez-Santiago, A Cáceres, R Pique-Regi, ...
BMC bioinformatics 12 (1), 166, 2011
602011
R-Gada: a fast and flexible pipeline for copy number analysis in association studies
R Pique-Regi, A Cáceres, JR González
BMC bioinformatics 11 (1), 380, 2010
582010
Cross-population joint analysis of eQTLs: fine mapping and functional annotation
X Wen, F Luca, R Pique-Regi
PLoS Genet 11 (4), e1005176, 2015
572015
Efficient integrative multi-SNP association analysis via deterministic approximation of posteriors
X Wen, Y Lee, F Luca, R Pique-Regi
The American Journal of Human Genetics 98 (6), 1114-1129, 2016
562016
High-throughput allele-specific expression across 250 environmental conditions
GA Moyerbrailean, AL Richards, D Kurtz, CA Kalita, GO Davis, CT Harvey, ...
Genome research 26 (12), 1627-1638, 2016
552016
Which genetics variants in DNase-Seq footprints are more likely to alter binding?
GA Moyerbrailean, CA Kalita, CT Harvey, X Wen, F Luca, R Pique-Regi
PLoS genetics 12 (2), e1005875, 2016
522016
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