Pouya Kheradpour
Pouya Kheradpour
Verily Life Sciences
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An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
125132012
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
42822015
The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
GTEx Consortium, KG Ardlie, DS Deluca, AV Segrè, TJ Sullivan, ...
Science 348 (6235), 648-660, 2015
32412015
Mapping and analysis of chromatin state dynamics in nine human cell types
J Ernst, P Kheradpour, TS Mikkelsen, N Shoresh, LD Ward, CB Epstein, ...
Nature 473 (7345), 43-49, 2011
28322011
Histone modifications at human enhancers reflect global cell-type-specific gene expression
ND Heintzman, GC Hon, RD Hawkins, P Kheradpour, A Stark, LF Harp, ...
Nature 459 (7243), 108-112, 2009
24022009
Evolution of genes and genomes on the Drosophila phylogeny
AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ...
Nature 450 (7167), 203-218, 2007
20432007
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
17112012
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biology 9 (4), e1001046, 2011
12642011
A high-resolution map of human evolutionary constraint using 29 mammals
K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ...
Nature 478 (7370), 476-482, 2011
10692011
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ...
Science 330 (6012), 1787-1797, 2010
9182010
Genome analysis of the platypus reveals unique signatures of evolution
WC Warren, LDW Hillier, JAM Graves, E Birney, CP Ponting, F Grützner, ...
Nature 453 (7192), 175, 2008
7322008
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ...
Nature 450 (7167), 219-232, 2007
6762007
A cis-regulatory map of the Drosophila genome
N Nègre, CD Brown, L Ma, CA Bristow, SW Miller, U Wagner, ...
Nature 471 (7339), 527-531, 2011
5002011
Genome-Wide Association Study in Asian Populations Identifies Variants in ETS1 and WDFY4 Associated with Systemic Lupus Erythematosus
W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ...
PLoS genetics 6 (2), e1000841, 2010
4122010
Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments
P Kheradpour, M Kellis
Nucleic acids research 42 (5), 2976-2987, 2014
3982014
A Comprehensive Map of Insulator Elements for the Drosophila Genome
N Nègre, CD Brown, PK Shah, P Kheradpour, CA Morrison, JG Henikoff, ...
PLoS genetics 6 (1), e1000814, 2010
3212010
An epigenetic signature for monoallelic olfactory receptor expression
A Magklara, A Yen, BM Colquitt, EJ Clowney, W Allen, ...
Cell 145 (4), 555-570, 2011
2712011
A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands
A Stark, N Bushati, CH Jan, P Kheradpour, E Hodges, J Brennecke, ...
Genes & development 22 (1), 8-13, 2008
2572008
Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay
P Kheradpour, J Ernst, A Melnikov, P Rogov, L Wang, X Zhang, J Alston, ...
Genome research 23 (5), 800-811, 2013
2472013
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
EP Murchison, C Tovar, A Hsu, HS Bender, P Kheradpour, CA Rebbeck, ...
Science 327 (5961), 84-87, 2010
2382010
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