Carole Knibbe
Carole Knibbe
Associate Professor in Computational Biology, INSA Lyon, France
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The surprising creativity of digital evolution: A collection of anecdotes from the evolutionary computation and artificial life research communities
J Lehman, J Clune, D Misevic, C Adami, L Altenberg, J Beaulieu, ...
Artificial life 26 (2), 274-306, 2020
New insights into bacterial adaptation through in vivo and in silico experimental evolution
T Hindré, C Knibbe, G Beslon, D Schneider
Nature Reviews Microbiology 10 (5), 352-365, 2012
Reductive genome evolution at both ends of the bacterial population size spectrum
B Batut, C Knibbe, G Marais, V Daubin
Nature Reviews Microbiology 12 (12), 841-850, 2014
A long-term evolutionary pressure on the amount of noncoding DNA
C Knibbe, A Coulon, O Mazet, JM Fayard, G Beslon
Molecular biology and evolution 24 (10), 2344-2353, 2007
In silico experimental evolution: a tool to test evolutionary scenarios
B Batut, DP Parsons, S Fischer, G Beslon, C Knibbe
BMC bioinformatics 14 (15), 1-11, 2013
Evolutionary coupling between the deleteriousness of gene mutations and the amount of non-coding sequences
C Knibbe, O Mazet, F Chaudier, JM Fayard, G Beslon
Journal of Theoretical Biology 244 (4), 621-630, 2007
Scaling laws in bacterial genomes: A side-effect of selection of mutational robustness?
G Beslon, DP Parsons, Y Sanchez-Dehesa, JM Pena, C Knibbe
Biosystems 102 (1), 32-40, 2010
Breaking good: accounting for fragility of genomic regions in rearrangement distance estimation
P Biller, L Guéguen, C Knibbe, E Tannier
Genome biology and evolution 8 (5), 1427-1439, 2016
The topology of the protein network influences the dynamics of gene order: From systems biology to a systemic understanding of evolution
C Knibbe, JM Fayard, G Beslon
Artificial life 14 (1), 149-156, 2008
Comparative genomics on artificial life
P Biller, C Knibbe, G Beslon, E Tannier
Conference on Computability in Europe, 35-44, 2016
Beware batch culture: Seasonality and niche construction predicted to favor bacterial adaptive diversification
C Rocabert, C Knibbe, J Consuegra, D Schneider, G Beslon
PLoS computational biology 13 (3), e1005459, 2017
A model for genome size evolution
S Fischer, S Bernard, G Beslon, C Knibbe
Bulletin of mathematical biology 76 (9), 2249-2291, 2014
Structuration des génomes par sélection indirecte de la variabilité mutationnelle: une approche de modélisation et de simulation
C Knibbe
INSA de Lyon, 2006
Importance of the Rearrangement Rates on the Organization of Genome Transcription.
DP Parsons, C Knibbe, G Beslon
ALife, 479-486, 2010
Self-adaptation of genome size in artificial organisms
C Knibbe, G Beslon, V Lefort, F Chaudier, JM Fayard
European Conference on Artificial Life, 423-432, 2005
Simultaneous optimization of weights and structure of an RBF neural network
V Lefort, C Knibbe, G Beslon, J Favrel
International Conference on Artificial Evolution (Evolution Artificielle), 49-60, 2005
In vitro oxidized HDL and HDL from type 2 diabetes patients have reduced ability to efflux oxysterols from THP-1 macrophages
Y Chen, M Arnal-Levron, F Hullin-Matsuda, C Knibbe, P Moulin, ...
Biochimie 153, 232-237, 2018
Obesity and hyperinsulinemia drive adipocytes to activate a cell cycle program and senesce
Q Li, CE Hagberg, H Silva Cascales, S Lang, MT Hyvönen, F Salehzadeh, ...
Nature Medicine 27 (11), 1941-1953, 2021
Breaking good: accounting for the diversity of fragile regions for estimating rearrangement distances
P Biller, C Knibbe, L Guéguen, E Tannier
Genome Biol Evol 8, 1427-39, 2016
A bio-inspired genetic algorithm with a self-organizing genome: The RBF-Gene Model
V Lefort, C Knibbe, G Beslon, J Favrel
Genetic and Evolutionary Computation Conference, 406-407, 2004
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