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Jiajie Xiao
Jiajie Xiao
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Title
Cited by
Cited by
Year
Uncovering large-scale conformational change in molecular dynamics without prior knowledge
RL Melvin, RC Godwin, J Xiao, WG Thompson, KS Berenhaut, ...
Journal of chemical theory and computation 12 (12), 6130-6146, 2016
512016
Combining capillary electrophoresis and next-generation sequencing for aptamer selection
KR Riley, J Gagliano, J Xiao, K Libby, S Saito, G Yu, R Cubicciotti, ...
Analytical and bioanalytical chemistry 407, 1527-1532, 2015
462015
Molecular dynamics simulations of aptamer-binding reveal generalized allostery in thrombin
J Xiao, FR Salsbury
Journal of Biomolecular Structure and Dynamics 35 (15), 3354-3369, 2017
342017
Mechanistic insights into thrombin's switch between “slow” and “fast” forms
J Xiao, RL Melvin, FR Salsbury
Physical Chemistry Chemical Physics 19 (36), 24522-24533, 2017
272017
Visualizing correlated motion with HDBSCAN clustering
RL Melvin, J Xiao, RC Godwin, KS Berenhaut, FR Salsbury Jr
Protein Science 27 (1), 62-75, 2018
182018
Probing light chain mutation effects on thrombin via molecular dynamics simulations and machine learning
J Xiao, RL Melvin, FR Salsbury Jr
Journal of Biomolecular Structure and Dynamics 37 (4), 982-999, 2019
162019
Na+-binding modes involved in thrombin's allosteric response as revealed by molecular dynamics simulations, correlation networks and Markov modeling
J Xiao, FR Salsbury
Physical Chemistry Chemical Physics 21 (8), 4320-4330, 2019
152019
Evaluation of a sensitive blood test for the detection of colorectal advanced adenomas in a prospective cohort using a multiomics approach
J Lin, E Ariazi, M Dzamba, TK Hsu, S Kothen-Hill, K Li, TY Liu, S Mahajan, ...
J Clin Oncol 39, 43, 2021
62021
Light Chain Mutation Effects on the Dynamics of Thrombin
D Wu, J Xiao, FR Salsbury Jr
Journal of Chemical Information and Modeling, 2021
62021
Thrombin-A Molecular Dynamics Perspective.
D Wu, A Prem, J Xiao, FR Salsbury
Mini Reviews in Medicinal Chemistry, 2023
22023
K-mer based classifiers extract functionally relevant features to support accurate peroxiredoxin subgroup distinction
J Xiao, WH Turkett Jr
bioRxiv, 387787, 2018
22018
Dynamic allostery and thrombin: Insights from modeling mutants, ions and binding using molecular dynamics, statistical analysis and machine learning
FR Salsbury, D Wu, J Xiao
Biophysical Journal 123 (3), 62a, 2024
2024
Toward Robust AI (2): How To Achieve Robust AI
J Xiao
JX's log, 2024
2024
Toward Robust AI (1): Why Robustness Matters
J Xiao
JX's log, 2023
2023
Improving Precancerous Case Characterization via Transformer-based Ensemble Learning
Y Zhong, J Xiao, T Vetterli, M Matin, E Loo, J Lin, R Bourgon, O Shapira
Empirical Methods in Natural Language Processing (EMNLP), 2022, 2022
2022
Advanced Clustering, Machine Learning And Conformational Change: New Methods And Some Applications
F Salsbury, R Melvin, J Xiao
Protein Science 28 (S1), 22-23, 2019
2019
Using correlated motions to determine sufficient sampling times for molecular dynamics
RL Melvin, J Xiao, KS Berenhaut, RC Godwin, FR Salsbury Jr
Physical Review E 98 (2), 023307, 2018
2018
Understanding Generalized Allostery In Thrombin
J Xiao
Wake Forest University, 2018
2018
Classifying Peroxiredoxin Subgroups and Identifying Discriminating Motifs via Machine Learning
J Xiao
Wake Forest University, 2018
2018
Generalized Allostery in Thrombin
J Xiao, FR Salsbury
Biophysical Journal 110 (3), 55a, 2016
2016
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Articles 1–20