Andrea Pagnani

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Riccardo Zecchinaprofessor, theoretical physics, Bocconi UniversityAdresse e-mail validée de unibocconi.it
Martin WeigtSorbonne Université Paris (former Université Pierre & Marie Curie)Adresse e-mail validée de upmc.fr
Alfredo BraunsteinDISAT, Politecnico di TorinoAdresse e-mail validée de polito.it
Chris SanderHarvard Medical School, Broad Institute, Dana-Farber Cancer Institute, Memorial Sloan KetteringAdresse e-mail validée de sanderlab.org
Giorgio ParisiProfessor of Theoretical Physics, Rome I University "La Sapienza"Adresse e-mail validée de roma1.infn.it
Debora MarksSystems Biology, Harvard Medical School, Broad Institute of Harvard and MITAdresse e-mail validée de hms.harvard.edu
Roberto MuletFacultad de Fisica, Universidad de la HabanaAdresse e-mail validée de fisica.uh.cu
Enzo MarinariProfessor of Theoretical Physics, Sapienza Università di RomaAdresse e-mail validée de uniroma1.it
Carlo BaldassiBocconi University; ELLIS scholarAdresse e-mail validée de unibocconi.it
Thomas A. HopfScientific ConsultantAdresse e-mail validée de thomashopf.com
Christoph FeinauerIsomorphic LabsAdresse e-mail validée de isomorphiclabs.com
Bryan J. LuntPhD Candidate, University of Illinois as Urbana-ChampaignAdresse e-mail validée de illinois.edu
Faruck MorcosUniversity of Texas at Dallas - Dept. Biological SciencesAdresse e-mail validée de utdallas.edu
Jose OnuchicCTBP Rice UniversityAdresse e-mail validée de rice.edu
Paolo ProveroProfessor, University of TurinAdresse e-mail validée de unito.it
Marco ZamparoUniversità del Piemonte OrientaleAdresse e-mail validée de uniupo.it
Federico Ricci-TersenghiProfessor of Theoretical Physics, "La Sapienza" University, RomaAdresse e-mail validée de roma1.infn.it
Pier Paolo PandolfiDirector, Cancer Center and Cancer Research Institute, Beth Israel Deaconess Medical CenterAdresse e-mail validée de bidmc.harvard.edu
Florian KarrethH. Lee Moffitt Cancer CenterAdresse e-mail validée de moffitt.org
Riccardo TaulliUniversity of TorinoAdresse e-mail validée de unito.it

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Andrea Pagnani

Professor at DISAT - Politecnico di Torino, and PI at the IIGM

Adresse e-mail validée de polito.it - Page d'accueil

Statistical physics combinatorial optimization bioinformatics biological modeling statistical inference


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Direct-coupling analysis of residue coevolution captures native contacts across many protein families F Morcos, A Pagnani, B Lunt, A Bertolino, DS Marks, C Sander, ... Proceedings of the National Academy of Sciences 108 (49), E1293-E1301, 2011	1548	2011
Protein 3D structure computed from evolutionary sequence variation DS Marks, LJ Colwell, R Sheridan, TA Hopf, A Pagnani, R Zecchina, ... PLoS One 6 (12), e28766, 2011	1264	2011
Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments U Ala, FA Karreth, C Bosia, A Pagnani, R Taulli, V Léopold, Y Tay, ... Proceedings of the National Academy of Sciences 110 (18), 7154-7159, 2013	343	2013
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence L Peña-Castillo, M Tasan, CL Myers, H Lee, T Joshi, C Zhang, Y Guan, ... Genome biology 9 (1), 1-19, 2008	298	2008
Coloring random graphs R Mulet, A Pagnani, M Weigt, R Zecchina Physical review letters 89 (26), 268701, 2002	249	2002
Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells F Neri, D Incarnato, A Krepelova, S Rapelli, A Pagnani, R Zecchina, ... Genome biology 14 (8), R91, 2013	201	2013
Fast and accurate multivariate Gaussian modeling of protein families: Predicting residue contacts and protein-interaction partners C Baldassi, M Zamparo, C Feinauer, A Procaccini, R Zecchina, M Weigt, ... PloS one 9 (3), e92721, 2014	178	2014
Critical exponents of the KPZ equation via multi-surface coding numerical simulations E Marinari, A Pagnani, G Parisi Journal of Physics A: Mathematical and General 33 (46), 8181, 2000	175	2000
Perturbation biology: inferring signaling networks in cellular systems EJ Molinelli, A Korkut, W Wang, ML Miller, NP Gauthier, X Jing, P Kaushik, ... PLoS computational biology 9 (12), e1003290, 2013	168	2013
Modelling competing endogenous RNA networks C Bosia, A Pagnani, R Zecchina PloS one 8 (6), e66609, 2013	144	2013
Somatic mutagenesis in satellite cells associates with human skeletal muscle aging I Franco, A Johansson, K Olsson, P Vrtačnik, P Lundin, HT Helgadottir, ... Nature communications 9 (1), 1-12, 2018	134	2018
Width distributions and the upper critical dimension of Kardar-Parisi-Zhang interfaces E Marinari, A Pagnani, G Parisi, Z Rácz Physical review E 65 (2), 026136, 2002	134	2002
Simultaneous reconstruction of multiple signaling pathways via the prize-collecting Steiner forest problem N Tuncbag, A Braunstein, A Pagnani, SSC Huang, J Chayes, C Borgs, ... Journal of computational biology 20 (2), 124-136, 2013	133	2013
Simultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis T Gueudré, C Baldassi, M Zamparo, M Weigt, A Pagnani Proceedings of the National Academy of Sciences 113 (43), 12186-12191, 2016	131	2016
Polynomial iterative algorithms for coloring and analyzing random graphs A Braunstein, R Mulet, A Pagnani, M Weigt, R Zecchina Physical Review E 68 (3), 036702, 2003	122	2003
Glassy transition in a disordered model for the RNA secondary structure A Pagnani, G Parisi, F Ricci-Tersenghi Physical review letters 84 (9), 2026, 2000	93	2000
Improving contact prediction along three dimensions C Feinauer, MJ Skwark, A Pagnani, E Aurell PLoS computational biology 10 (10), e1003847, 2014	88	2014
Numerical estimate of the Kardar-Parisi-Zhang universality class in (2+ 1) dimensions A Pagnani, G Parisi Physical Review E 92 (1), 010101, 2015	81	2015
Efficient generative modeling of protein sequences using simple autoregressive models J Trinquier, G Uguzzoni, A Pagnani, F Zamponi, M Weigt Nature Communications 12, 2021	79	2021
Threshold values, stability analysis, and high-q asymptotics for the coloring problem on random graphs F Krząkała, A Pagnani, M Weigt Physical Review E 70 (4), 046705, 2004	75	2004

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