Can Cenik
Can Cenik
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Identification of neuronal RNA targets of TDP-43-containing ribonucleoprotein complexes
CF Sephton, C Cenik, A Kucukural, EB Dammer, B Cenik, YH Han, ...
Journal of biological chemistry 286 (2), 1204-1215, 2011
The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus
G Singh, A Kucukural, C Cenik, JD Leszyk, SA Shaffer, Z Weng, MJ Moore
Cell 151 (4), 750-764, 2012
Next generation software for functional trend analysis
GF Berriz, JE Beaver, C Cenik, M Tasan, FP Roth
Bioinformatics 25 (22), 3043-3044, 2009
Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans.
C Cenik, ES Cenik, GW Byeon, F Grubert, SI Candille, D Spacek, ...
Genome Research 25 (11), 1610-1621, 2015
Introns in UTRs: why we should stop ignoring them
AA Bicknell, C Cenik, HN Chua, FP Roth, MJ Moore
Bioessays 34 (12), 1025-1034, 2012
Staufen1 senses overall transcript secondary structure to regulate translation
EP Ricci, A Kucukural, C Cenik, BC Mercier, G Singh, EE Heyer, ...
Nature structural & molecular biology 21 (1), 26, 2014
Identification of significantly mutated regions across cancer types highlights a rich landscape of functional molecular alterations
CL Araya, C Cenik, JA Reuter, G Kiss, VS Pande, MP Snyder, ...
Nature genetics 48 (2), 117-125, 2016
Genome analysis reveals interplay between 5′ UTR introns and nuclear mRNA export for secretory and mitochondrial genes
C Cenik, HN Chua, H Zhang, SP Tarnawsky, A Akef, A Derti, M Tasan, ...
PLoS genetics 7 (4), e1001366, 2011
Genome-wide functional analysis of human 5'untranslated region introns
C Cenik, A Derti, JC Mellor, GF Berriz, FP Roth
Genome biology 11 (3), 1-17, 2010
An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments
EE Heyer, H Ozadam, EP Ricci, C Cenik, MJ Moore
Nucleic acids research 43 (1), e2-e2, 2015
RanBP2/Nup358 potentiates the translation of a subset of mRNAs encoding secretory proteins
K Mahadevan, H Zhang, A Akef, XA Cui, S Gueroussov, C Cenik, FP Roth, ...
PLoS Biol 11 (4), e1001545, 2013
Absence of evidence for MHC–dependent mate selection within HapMap populations
A Derti, C Cenik, P Kraft, FP Roth
PLoS Genet 6 (4), e1000925, 2010
ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq
A Kucukural, H Özadam, G Singh, MJ Moore, C Cenik
Bioinformatics 29 (19), 2485-2486, 2013
A common class of transcripts with 5′-intron depletion, distinct early coding sequence features, and N1-methyladenosine modification
C Cenik, HN Chua, G Singh, A Akef, MP Snyder, AF Palazzo, MJ Moore, ...
RNA 23 (3), 270-283, 2017
Maternal ribosomes are sufficient for tissue diversification during embryonic development in C. elegans
ES Cenik, X Meng, NH Tang, RN Hall, JA Arribere, C Cenik, Y Jin, A Fire
Developmental cell 48 (6), 811-826. e6, 2019
Plasma sterols and depressive symptom severity in a population-based cohort
B Cenik, C Cenik, MP Snyder, ES Brown
PloS one 12 (9), e0184382, 2017
RiboFlow, RiboR and RiboPy: an ecosystem for analyzing ribosome profiling data at read length resolution
H Ozadam, M Geng, C Cenik
Bioinformatics 36 (9), 2929-2931, 2020
Genes with 5'terminal oligopyrimidine tracts preferentially escape global suppression of translation by the SARS-CoV-2 NSP1 protein
S Rao, I Hoskins, D Garcia, T Tonn, H Ozadam, ES Cenik, C Cenik
Biorxiv, 2020
Pacific salmon and the coalescent effective population size
C Cenik, J Wakeley
PLoS One 5 (9), e13019, 2010
Simultaneous RNA purification and size selection using on-chip isotachophoresis with an ionic spacer
CM Han, D Catoe, SA Munro, R Khnouf, MP Snyder, JG Santiago, ...
Lab on a Chip 19 (16), 2741-2749, 2019
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