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Günhan Gülsoy
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Topologically associating domains are stable units of replication-timing regulation
BD Pope, T Ryba, V Dileep, F Yue, W Wu, O Denas, DL Vera, Y Wang, ...
Nature 515 (7527), 402-405, 2014
9172014
Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes
W Ma, F Ay, C Lee, G Gulsoy, X Deng, S Cook, J Hesson, C Cavanaugh, ...
Nature methods 12 (1), 71-78, 2015
2112015
Using DNase Hi-C techniques to map global and local three-dimensional genome architecture at high resolution
W Ma, F Ay, C Lee, G Gulsoy, X Deng, S Cook, J Hesson, C Cavanaugh, ...
Methods 142, 59-73, 2018
302018
Profiling the long noncoding RNA interaction network in the regulatory elements of target genes by chromatin in situ reverse transcription sequencing
S Zhang, Y Wang, L Jia, X Wen, Z Du, C Wang, Y Hao, D Yu, L Zhou, ...
Genome Research 29 (9), 1521-1532, 2019
282019
RINQ: Reference-based indexing for network queries
G Gülsoy, T Kahveci
Bioinformatics 27 (13), i149-i158, 2011
152011
Topac: alignment of gene regulatory networks using topology-aware coloring
G Guelsoy, B Gandhi, T Kahveci
Journal of bioinformatics and computational biology 10 (01), 1240001, 2012
142012
Chromatin lncRNA Platr10 controls stem cell pluripotency by coordinating an intrachromosomal regulatory network
Z Du, X Wen, Y Wang, L Jia, S Zhang, Y Liu, L Zhou, H Li, W Yang, ...
Genome Biology 22, 1-29, 2021
132021
HIDEN: Hierarchical decomposition of regulatory networks
G Gulsoy, N Bandhyopadhyay, T Kahveci
BMC bioinformatics 13 (1), 250, 2012
132012
Topology aware coloring of gene regulatory networks
G Gülsoy, B Gandhi, T Kahveci
Proceedings of the 2nd ACM Conference on Bioinformatics, Computational …, 2011
52011
Finding steady states of large scale regulatory networks through partitioning
F Ay, G Gulsoy, T Kahveci
2010 IEEE International Workshop on Genomic Signal Processing and Statistics …, 2010
52010
Mining Biological Networks for Similar Patterns
F Ay, G Gülsoy, T Kahveci
Data Mining: Foundations and Intelligent Paradigms: Volume 3: Medical …, 2012
22012
Author Correction: chromatin lncRNA Platr10 controls stem cell pluripotency by coordinating an intrachromosomal regulatory network
Z Du, X Wen, Y Wang, L Jia, S Zhang, Y Liu, L Zhou, H Li, W Yang, ...
Genome Biology 22, 2021
12021
Inferring gene functions from metabolic reactions
G Gülsoy, T Kahveci
Proceedings 2012 IEEE International Workshop on Genomic Signal Processing …, 2012
12012
Chapter 4: Indexing for Similarity Queries on Biological Networks
G Gülsoy, MM Hasan, Y Kavurucu, T Kahveci
Biological Data Mining and its Applications in Healthcare, 105-122, 2014
2014
Querying Large Biological Network Datasets
G Gulsoy, T Kahveci
University of Florida, 2013
2013
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Articles 1–15