Deriving disease modules from the compressed transcriptional space embedded in a deep autoencoder SK Dwivedi, A Tjärnberg, J Tegnér, M Gustafsson Nature communications 11 (1), 856, 2020 | 44 | 2020 |
Uncovering randomness and success in society S Jalan, C Sarkar, A Madhusudanan, SK Dwivedi PloS one 9 (2), e88249, 2014 | 39 | 2014 |
Quantifying randomness in protein–protein interaction networks of different species: a random matrix approach A Agrawal, C Sarkar, SK Dwivedi, N Dhasmana, S Jalan Physica A: Statistical Mechanics and its Applications 404, 359-367, 2014 | 26 | 2014 |
Optimized evolution of networks for principal eigenvector localization P Pradhan, A Yadav, SK Dwivedi, S Jalan Physical Review E 96 (2), 022312, 2017 | 25 | 2017 |
Optimization of synchronizability in multiplex networks by rewiring one layer SK Dwivedi, MS Baptista, S Jalan Physical Review E 95 (4), 040301, 2017 | 24 | 2017 |
Optimization of synchronizability in multiplex networks SK Dwivedi, C Sarkar, S Jalan Europhysics Letters 111 (1), 10005, 2015 | 24 | 2015 |
Emergence of clustering: Role of inhibition SK Dwivedi, S Jalan Physical Review E 90 (3), 032803, 2014 | 22 | 2014 |
Extreme-value statistics of networks with inhibitory and excitatory couplings SK Dwivedi, S Jalan Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 87 (4 …, 2013 | 18 | 2013 |
Classification of HIV-1 sequences using profile Hidden Markov Models SK Dwivedi, S Sengupta PLoS One 7 (5), e36566, 2012 | 14 | 2012 |
Extreme-value statistics of brain networks: Importance of balanced condition S Jalan, SK Dwivedi Physical Review E 89 (6), 062718, 2014 | 9 | 2014 |
Interplay of inhibition and multiplexing: Largest eigenvalue statistics S Ghosh, SK Dwivedi, MV Ivanchenko, S Jalan Europhysics Letters 115 (1), 10001, 2016 | 7 | 2016 |
Emergence of (bi) multi-partiteness in networks having inhibitory and excitatory couplings S Jalan, SK Dwivedi Europhysics Letters 112 (4), 48003, 2015 | 5 | 2015 |
Interplay of mutation and disassortativity SK Dwivedi, S Jalan Physical Review E 92 (2), 022802, 2015 | 5 | 2015 |
Evolution of correlated multiplexity through stability maximization SK Dwivedi, S Jalan Physical Review E 95 (2), 022309, 2017 | 3 | 2017 |
NCAE: data-driven representations using a deep network-coherent DNA methylation autoencoder identify robust disease and risk factor signatures D Martínez-Enguita, SK Dwivedi, R Jörnsten, M Gustafsson Briefings in Bioinformatics 24 (5), bbad293, 2023 | 1 | 2023 |
Deep learning genome-wide genetics through biregular sparse decoder layer: deriving new disease genetic associations and disease risk predictions M Gustafsson, S Dwivedi, S Hellberg, L Padyukov, R Jornsten | | 2023 |
Data-driven representations using deep network-coherent methylation autoencoders to identify robust disease and risk factor signatures D Martínez-Enguita, SK Dwivedi, R Jörnsten, M Gustafsson bioRxiv, 2023.03. 07.531501, 2023 | | 2023 |
Supplementary Data Optimized evolution of networks for principal eigenvector localization P Pradhan, A Yadav, SK Dwivedi, S Jalan | | 2017 |
Balanced condition in networks leads to Weibull statistics S Jalan, SK Dwivedi arXiv preprint arXiv:1311.6950, 2013 | | 2013 |
" The third hidden layer of a deep methylation autoencoder shows gene co-localization patterns in the interactome. D Martínez-Enguita, SK Dwivedi, M Gustafsson space 1, 1, 0 | | |