| Polarizable force fields for biomolecular simulations: Recent advances and applications Z Jing, C Liu, SY Cheng, R Qi, BD Walker, JP Piquemal, P Ren Annual Review of biophysics 48, 371-394, 2019 | 323 | 2019 |
| General model for treating short-range electrostatic penetration in a molecular mechanics force field Q Wang, JA Rackers, C He, R Qi, C Narth, L Lagardere, N Gresh, ... Journal of chemical theory and computation 11 (6), 2609-2618, 2015 | 114 | 2015 |
| Many-body effect determines the selectivity for Ca2+ and Mg2+ in proteins Z Jing, C Liu, R Qi, P Ren Proceedings of the National Academy of Sciences 115 (32), E7495-E7501, 2018 | 81 | 2018 |
| Synthesis of 2-(Trifluoromethyl)oxazoles from β-Monosubstituted Enamines via PhI(OCOCF3)2-Mediated Trifluoroacetoxylation and Cyclization F Zhao, X Liu, R Qi, D Zhang-Negrerie, J Huang, Y Du, K Zhao The Journal of Organic Chemistry 76 (24), 10338-10344, 2011 | 68 | 2011 |
| Study of interactions between metal ions and protein model compounds by energy decomposition analyses and the AMOEBA force field Z Jing, R Qi, C Liu, P Ren The Journal of chemical physics 147 (16), 2017 | 58 | 2017 |
| DNA repair enzymes ALKBH2, ALKBH3, and AlkB oxidize 5-methylcytosine to 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxylcytosine in vitro K Bian, SAP Lenz, Q Tang, F Chen, R Qi, M Jost, CL Drennan, ... Nucleic acids research 47 (11), 5522-5529, 2019 | 54 | 2019 |
| Calculating binding free energies of host–guest systems using the AMOEBA polarizable force field DR Bell, R Qi, Z Jing, JY Xiang, C Mejias, MJ Schnieders, JW Ponder, ... Physical Chemistry Chemical Physics 18 (44), 30261-30269, 2016 | 52 | 2016 |
| United polarizable multipole water model for molecular mechanics simulation R Qi, LP Wang, Q Wang, VS Pande, P Ren The Journal of chemical physics 143 (1), 2015 | 43 | 2015 |
| General van der Waals potential for common organic molecules R Qi, Q Wang, P Ren Bioorganic & medicinal chemistry 24 (20), 4911-4919, 2016 | 37 | 2016 |
| Capturing many-body interactions with classical dipole induction models C Liu, R Qi, Q Wang, JP Piquemal, P Ren Journal of chemical theory and computation 13 (6), 2751-2761, 2017 | 29 | 2017 |
| Elucidating the phosphate binding mode of phosphate-binding protein: the critical effect of buffer solution R Qi, Z Jing, C Liu, JP Piquemal, KN Dalby, P Ren The Journal of Physical Chemistry B 122 (24), 6371-6376, 2018 | 27 | 2018 |
| A Highly Stereoselective Addition of Lithiated Ynamides to Ellman–Davis Chiral N-tert-Butanesulfinyl Imines XN Wang, RP Hsung, R Qi, SK Fox, MC Lv Organic letters 15 (10), 2514-2517, 2013 | 27 | 2013 |
| A convenient synthesis of γ-amino-ynamides via additions of lithiated ynamides to aryl imines; observation of an Aza-Meyer–Schuster rearrangement R Qi, XN Wang, KA DeKorver, Y Tang, CC Wang, Q Li, H Li, MC Lv, Q Yu, ... Synthesis 45 (13), 1749-1758, 2013 | 21 | 2013 |
| Molecular dynamics study of the hybridization between RNA and modified oligonucleotides Z Jing, R Qi, M Thibonnier, P Ren Journal of chemical theory and computation 15 (11), 6422-6432, 2019 | 16 | 2019 |
| Computational and experimental studies of inhibitor Design for Aldolase A R Qi, B Walker, Z Jing, M Yu, G Stancu, R Edupuganti, KN Dalby, P Ren The Journal of Physical Chemistry B 123 (28), 6034-6041, 2019 | 10 | 2019 |
| Synthesis of de Novo Chiral γ-Amino-Ynamides Using Lithiated Ynamides. Observation of a Unique 5-Endo-Dig Cyclization with an Inversion of S-Center XN Wang, RP Hsung, SK Fox, MC Lv, R Qi Heterocycles 88 (2), 1233, 2014 | 10 | 2014 |
| Genetic and Epigenetic Biomarkers Related to 2-Oxoglutarate/Fe (II)-Dependent Oxygenases and Implications for Disease and Toxicology J Wang, R Qi, H Li, C Christov, N Lehnert, D Li Biomarkers in Toxicology, 323-349, 2023 | 1 | 2023 |
| Sequence Dependent Repair of 1,N6-Ethenoadenine by DNA Repair Enzymes ALKBH2, ALKBH3, and AlkB R Qi, K Bian, F Chen, Q Tang, X Zhou, D Li Molecules 26 (17), 5285, 2021 | 1 | 2021 |
| Stable Interstrand Cross-Links Generated from the Repair of 1,N6-Ethenoadenine in DNA by α-Ketoglutarate/Fe(II)-Dependent Dioxygenase ALKBH2 J Wang, NA Takyi, YC Hsiao, Q Tang, YT Chen, CW Liu, J Ma, R Qi, ... Journal of the American Chemical Society, 2024 | | 2024 |
| Effect of sequence context on 1, N6-ethenoadenine repair by the AlkB family DNA repair enzymes R Qi, K Bian, Q Tang, F Chen, D Li ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 258, 2019 | | 2019 |
Pengyu RenDepartment of Biomedical Engineering, The University of Texas at AustinAdresse e-mail validée de mail.utexas.edu
