Páll Melsted
Páll Melsted
Professor of Computer Science, University of Iceland
Adresse e-mail validée de hi.is - Page d'accueil
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Near-optimal probabilistic RNA-seq quantification
NL Bray, H Pimentel, P Melsted, L Pachter
Nature biotechnology 34 (5), 525-527, 2016
38942016
Spread of SARS-CoV-2 in the Icelandic population
DF Gudbjartsson, A Helgason, H Jonsson, OT Magnusson, P Melsted, ...
New England Journal of Medicine 382 (24), 2302-2315, 2020
11072020
Mash: fast genome and metagenome distance estimation using MinHash
BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ...
Genome biology 17 (1), 1-14, 2016
10252016
Differential analysis of RNA-seq incorporating quantification uncertainty
H Pimentel, NL Bray, S Puente, P Melsted, L Pachter
Nature methods 14 (7), 687, 2017
7402017
Humoral immune response to SARS-CoV-2 in Iceland
DF Gudbjartsson, GL Norddahl, P Melsted, K Gunnarsdottir, H Holm, ...
New England Journal of Medicine 383 (18), 1724-1734, 2020
4642020
Efficient counting of k-mers in DNA sequences using a bloom filter
P Melsted, JK Pritchard
BMC bioinformatics 12 (1), 1-7, 2011
2602011
Comparative RNA sequencing reveals substantial genetic variation in endangered primates
GH Perry, P Melsted, JC Marioni, Y Wang, R Bainer, JK Pickrell, ...
Genome research 22 (4), 602-610, 2012
1402012
Genomic‐scale capture and sequencing of endogenous DNA from feces
GH Perry, JC Marioni, P Melsted, Y Gilad
Molecular ecology 19 (24), 5332-5344, 2010
1212010
Graphtyper enables population-scale genotyping using pangenome graphs
HP Eggertsson, H Jonsson, S Kristmundsdottir, E Hjartarson, B Kehr, ...
Nature genetics 49 (11), 1654, 2017
982017
A Genome Sequence Resource for the Aye-Aye (Daubentonia madagascariensis), a Nocturnal Lemur from Madagascar
GH Perry, D Reeves, P Melsted, A Ratan, W Miller, K Michelini, ...
Genome biology and evolution 4 (2), 126-135, 2012
682012
Maximum matchings in random bipartite graphs and the space utilization of cuckoo hash tables
A Frieze, P Melsted
Random Structures & Algorithms 41 (3), 334-364, 2012
632012
Pseudoalignment for metagenomic read assignment
L Schaeffer, H Pimentel, N Bray, P Melsted, L Pachter
Bioinformatics 33 (14), 2082-2088, 2017
612017
An Analysis of Random-Walk Cuckoo Hashing
A Frieze, P Melsted, M Mitzenmacher
SIAM Journal on Computing 40, 291, 2011
612011
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
P Melsted, AS Booeshaghi, L Liu, F Gao, L Lu, KHJ Min, ...
Nature Biotechnology, 1-6, 2021
55*2021
KmerStream: streaming algorithms for k -mer abundance estimation
P Melsted, BV Halldórsson
Bioinformatics 30 (24), 3541-3547, 2014
522014
The barcode, UMI, set format and BUStools
P Melsted, V Ntranos, L Pachter
Bioinformatics 35 (21), 4472-4473, 2019
482019
A discriminative learning approach to differential expression analysis for single-cell RNA-seq
V Ntranos, L Yi, P Melsted, L Pachter
Nature methods 16 (2), 163-166, 2019
452019
Insights into imprinting from parent-of-origin phased methylomes and transcriptomes
F Zink, DN Magnusdottir, OT Magnusson, NJ Walker, TJ Morris, ...
Nature genetics 50 (11), 1542-1552, 2018
432018
PageRank and the random surfer model.
P Chebolu, P Melsted
SODA 8, 1010-1018, 2008
402008
Looking into the past–the reaction of three grouse species to climate change over the last million years using whole genome sequences
R Kozma, P Melsted, KP Magnússon, J Höglund
Molecular ecology 25 (2), 570-580, 2016
392016
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