Paola Bonizzoni

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Gianluca Della VedovaUniversità degli Studi di Milano-BicoccaAdresse e-mail validée de dellavedova.org
Riccardo DondiUniversità degli studi di BergamoAdresse e-mail validée de unibg.it
Raffaella RizziRicercatore confermato in Informatica, Università degli Studi di Milano-BicoccaAdresse e-mail validée de disco.unimib.it
Yuri PirolaAssociate professor at DISCo, Univ. of Milano-BicoccaAdresse e-mail validée de unimib.it
Giancarlo MauriProfessor emeritus of Computer Science - University of Milano-BicoccaAdresse e-mail validée de unimib.it
Rosalba ZizzaRicercatore INF/01, Univ. di SalernoAdresse e-mail validée de dia.unisa.it
Clelia De FeliceProfessor of Computer Science, University of SalernoAdresse e-mail validée de dia.unisa.it
Stefano BerettaSan Raffaele Telethon Institute for Gene TherapyAdresse e-mail validée de hsr.it
Simone CiccolellaUniversity of Study Milano-BicoccaAdresse e-mail validée de unimib.it
Graziano PesoleProfessor of Molecular Biology, Università degli Studi di Bari and National Research CouncilAdresse e-mail validée de uniba.it
Murray PattersonAssistant Professor, Georgia State UniversityAdresse e-mail validée de cs.gsu.edu
Picardi ErnestoFull Professor of Molecular BiologyAdresse e-mail validée de uniba.it
Simone ZaccariaGroup Leader, University College London, Cancer InstituteAdresse e-mail validée de ucl.ac.uk
Gunnar W. KlauHeinrich Heine University DüsseldorfAdresse e-mail validée de hhu.de
Nadia PisantiUniversity of Pisa & Erable Team INRIAAdresse e-mail validée de di.unipi.it
Gabriella TruccoAssistant Professor, Università degli Studi di MilanoAdresse e-mail validée de unimi.it
Giulia BernardiniAssistant Professor at the University of TriesteAdresse e-mail validée de unimib.it
Tao JiangUC RiversideAdresse e-mail validée de cs.ucr.edu
Claudio FerrettiAssociated Professor of Computer Science, Milano-Bicocca UniversityAdresse e-mail validée de disco.unimib.it
Anna Paola CarrieriManager & Research Scientist at IBM ResearchAdresse e-mail validée de uk.ibm.com

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Paola Bonizzoni

University of Milano Bicocca

Adresse e-mail validée de unimib.it

Computer science Bioinformatics


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
The complexity of multiple sequence alignment with SP-score that is a metric P Bonizzoni, G Della Vedova Theoretical Computer Science 259 (1-2), 63-79, 2001	188	2001
The haplotyping problem: an overview of computational models and solutions P Bonizzoni, G Della Vedova, R Dondi, J Li Journal of Computer Science and Technology 18, 675-688, 2003	158	2003
Reconciling a gene tree to a species tree under the duplication cost model P Bonizzoni, G Della Vedova, R Dondi Theoretical computer science 347 (1-2), 36-53, 2005	99	2005
ASPicDB: a database resource for alternative splicing analysis T Castrignanò, M D’Antonio, A Anselmo, D Carrabino, A D’Onorio De Meo, ... Bioinformatics 24 (10), 1300-1304, 2008	60	2008
HapCol: accurate and memory-efficient haplotype assembly from long reads Y Pirola, S Zaccaria, R Dondi, GW Klau, N Pisanti, P Bonizzoni Bioinformatics 32 (11), 1610-1617, 2016	57	2016
Experimenting an approximation algorithm for the LCS P Bonizzoni, G Della Vedova, G Mauri Discrete Applied Mathematics 110 (1), 13-24, 2001	53	2001
ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences P Bonizzoni, R Rizzi, G Pesole BMC bioinformatics 6, 1-16, 2005	51	2005
Inferring cancer progression from single-cell sequencing while allowing mutation losses S Ciccolella, C Ricketts, M Soto Gomez, M Patterson, D Silverbush, ... Bioinformatics 37 (3), 326-333, 2021	47	2021
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing PL Martelli, M D’Antonio, P Bonizzoni, T Castrignano, AM D’Erchia, ... Nucleic acids research 39 (suppl_1), D80-D85, 2010	47	2010
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era R Rizzi, S Beretta, M Patterson, Y Pirola, M Previtali, G Della Vedova, ... Quantitative Biology 7, 278-292, 2019	45	2019
ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events L Denti, R Rizzi, S Beretta, GD Vedova, M Previtali, P Bonizzoni BMC bioinformatics 19, 1-21, 2018	43	2018
On the approximation of correlation clustering and consensus clustering P Bonizzoni, G Della Vedova, R Dondi, T Jiang Journal of Computer and System Sciences 74 (5), 671-696, 2008	43	2008
Exemplar longest common subsequence P Bonizzoni, G Della Vedova, R Dondi, G Fertin, R Rizzi, S Vialette IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (4), 535-543, 2007	43	2007
ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization T Castrignano, R Rizzi, IG Talamo, PDO De Meo, A Anselmo, P Bonizzoni, ... Nucleic Acids Research 34 (suppl_2), W440-W443, 2006	41	2006
Separating some splicing models P Bonizzoni, C Ferretti, G Mauri, R Zizza Information Processing Letters 79 (6), 255-259, 2001	41	2001
On the minimum error correction problem for haplotype assembly in diploid and polyploid genomes P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria Journal of Computational Biology 23 (9), 718-736, 2016	40	2016
Computational graph pangenomics: a tutorial on data structures and their applications JA Baaijens, P Bonizzoni, C Boucher, G Della Vedova, Y Pirola, R Rizzi, ... Natural Computing 21 (1), 81-108, 2022	39	2022
Variants of constrained longest common subsequence P Bonizzoni, G Della Vedova, R Dondi, Y Pirola Information Processing Letters 110 (20), 877-881, 2010	38	2010
An approximation algorithm for the shortest common supersequence problem: an experimental analysis P Barone, P Bonizzoni, GD Vedova, G Mauri Proceedings of the 2001 ACM symposium on applied computing, 56-60, 2001	37	2001
Further steps in TANGO: improved taxonomic assignment in metagenomics D Alonso-Alemany, A Barré, S Beretta, P Bonizzoni, M Nikolski, ... Bioinformatics 30 (1), 17-23, 2014	35	2014

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