Nicholas Bokulich
TitleCited byYear
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
NA Bokulich, S Subramanian, JJ Faith, D Gevers, JI Gordon, R Knight, ...
Nature methods 10 (1), 57, 2013
12822013
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer
MG Dominguez-Bello, KM De Jesus-Laboy, N Shen, LM Cox, A Amir, ...
Nature medicine 22 (3), 250, 2016
4022016
Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate
NA Bokulich, JH Thorngate, PM Richardson, DA Mills
Proceedings of the National Academy of Sciences 111 (1), E139-E148, 2014
3812014
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457, 2017
3592017
Antibiotics, birth mode, and diet shape microbiome maturation during early life
NA Bokulich, J Chung, T Battaglia, N Henderson, M Jay, H Li, AD Lieber, ...
Science translational medicine 8 (343), 343ra82-343ra82, 2016
3262016
The soil microbiome influences grapevine-associated microbiota
I Zarraonaindia, SM Owens, P Weisenhorn, K West, J Hampton-Marcell, ...
MBio 6 (2), e02527-14, 2015
2192015
Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities
NA Bokulich, DA Mills
Appl. Environ. Microbiol. 79 (8), 2519-2526, 2013
1842013
Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment
YR Nobel, LM Cox, FF Kirigin, NA Bokulich, S Yamanishi, I Teitler, ...
Nature communications 6, 7486, 2015
1822015
The microbiology of malting and brewing
NA Bokulich, CW Bamforth
Microbiol. Mol. Biol. Rev. 77 (2), 157-172, 2013
1812013
Next-generation sequencing reveals significant bacterial diversity of botrytized wine
NA Bokulich, CML Joseph, G Allen, AK Benson, DA Mills
PloS one 7 (5), e36357, 2012
1582012
Facility-specific “house” microbiome drives microbial landscapes of artisan cheesemaking plants
NA Bokulich, DA Mills
Appl. Environ. Microbiol. 79 (17), 5214-5223, 2013
1252013
Brewhouse-resident microbiota are responsible for multi-stage fermentation of American coolship ale
NA Bokulich, CW Bamforth, DA Mills
PloS one 7 (4), e35507, 2012
1222012
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
1212018
Monitoring seasonal changes in winery-resident microbiota
NA Bokulich, M Ohta, PM Richardson, DA Mills
PloS one 8 (6), e66437, 2013
1092013
Next-generation approaches to the microbial ecology of food fermentations
NA Bokulich, DA Mills
BMB reports 45 (7), 377-389, 2012
982012
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ...
Microbiome 6 (1), 90, 2018
972018
Human milk glycomics and gut microbial genomics in infant feces show a correlation between human milk oligosaccharides and gut microbiota: a proof-of-concept study
MLA De Leoz, KM Kalanetra, NA Bokulich, JS Strum, MA Underwood, ...
Journal of proteome research 14 (1), 491-502, 2014
932014
Associations among wine grape microbiome, metabolome, and fermentation behavior suggest microbial contribution to regional wine characteristics
NA Bokulich, TS Collins, C Masarweh, G Allen, H Heymann, SE Ebeler, ...
MBio 7 (3), e00631-16, 2016
762016
Antibiotic perturbation of the murine gut microbiome enhances the adiposity, insulin resistance, and liver disease associated with high-fat diet
D Mahana, CM Trent, ZD Kurtz, NA Bokulich, T Battaglia, J Chung, ...
Genome medicine 8 (1), 48, 2016
722016
A comparison of two probiotic strains of bifidobacteria in premature infants
MA Underwood, KM Kalanetra, NA Bokulich, ZT Lewis, M Mirmiran, ...
The Journal of pediatrics 163 (6), 1585-1591. e9, 2013
652013
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Articles 1–20