Jiri Macas
Jiri Macas
Principal investigator at Biology Centre ASCR, Ceske Budejovice, Czech Republic
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RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads
P Novák, P Neumann, J Pech, J Steinhaisl, J Macas
Bioinformatics 29 (6), 792-793, 2013
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
P Novák, P Neumann, J Macas
BMC bioinformatics 11, 1-12, 2010
A reference genome for pea provides insight into legume genome evolution
J Kreplak, MA Madoui, P Cápal, P Novák, K Labadie, G Aubert, PE Bayer, ...
Nature genetics 51 (9), 1411-1422, 2019
Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula
J Macas, P Neumann, A Navrátilová
BMC genomics 8, 1-16, 2007
Pea (Pisum sativum L.) in the Genomic Era
P Smýkal, G Aubert, J Burstin, CJ Coyne, NTH Ellis, AJ Flavell, R Ford, ...
Agronomy 2 (2), 74-115, 2012
Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification
P Neumann, P Novák, N Hoštáková, J Macas
Mobile DNA 10, 1-17, 2019
TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads
P Novák, L Ávila Robledillo, A Koblížková, I Vrbová, P Neumann, J Macas
Nucleic acids research 45 (12), e111-e111, 2017
Repeatless and repeat-based centromeres in potato: implications for centromere evolution
Z Gong, Y Wu, A Koblížková, GA Torres, K Wang, M Iovene, P Neumann, ...
The Plant Cell 24 (9), 3559-3574, 2012
Genetics of sex determination in flowering plants
S Grant, A Houben, B Vyskot, J Siroky, WH Pan, J Macas, H Saedler
Developmental Genetics 15 (3), 214-230, 1994
Loading of Arabidopsis Centromeric Histone CENH3 Occurs Mainly during G2 and Requires the Presence of the Histone Fold Domain
I Lermontova, V Schubert, J Fuchs, S Klatte, J Macas, I Schubert
The Plant Cell 18 (10), 2443-2451, 2006
Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences
MM Martis, S Klemme, AM Banaei-Moghaddam, FR Blattner, J Macas, ...
Proceedings of the National Academy of Sciences 109 (33), 13343-13346, 2012
Plant centromeric retrotransposons: a structural and cytogenetic perspective
P Neumann, A Navrátilová, A Koblížková, E Kejnovský, E Hřibová, ...
Mobile DNA 2, 1-16, 2011
In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae
J Macas, P Novák, J Pellicer, J Čížková, A Koblížková, P Neumann, ...
PloS one 10 (11), e0143424, 2015
Analysis of nuclear DNA content and ploidy in higher plants
DW Galbraith, GM Lambert, J Macas, J Dolezel
Current protocols in cytometry 2 (1), 7.6. 1-7.6. 22, 1997
Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived …
S Renny-Byfield, M Chester, A Kovařík, SC Le Comber, MA Grandbastien, ...
Molecular biology and evolution 28 (10), 2843-2854, 2011
Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2
P Novák, P Neumann, J Macas
Nature Protocols 15 (11), 3745-3776, 2020
PlantSat: a specialized database for plant satellite repeats
J Macas, T Meszaros, M Nouzova
Bioinformatics 18 (1), 28-35, 2002
Stretching the rules: monocentric chromosomes with multiple centromere domains
P Neumann, A Navratilova, E Schroeder-Reiter, A Koblížková, ...
PLoS genetics 8 (6), e1002777, 2012
Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size
LJ Kelly, S Renny‐Byfield, J Pellicer, J Macas, P Novák, P Neumann, ...
New Phytologist 208 (2), 596-607, 2015
Genomic repeat abundances contain phylogenetic signal
S Dodsworth, MW Chase, LJ Kelly, IJ Leitch, J Macas, P Novak, ...
Systematic biology 64 (1), 112-126, 2015
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