|BIPES, a cost-effective high-throughput method for assessing microbial diversity|
HW Zhou, DF Li, NFY Tam, XT Jiang, H Zhang, HF Sheng, J Qin, X Liu, ...
The ISME journal 5 (4), 741-749, 2011
|Vitamin D inhibits COX-2 expression and inflammatory response by targeting thioesterase superfamily member 4|
Q Wang, Y He, Y Shen, Q Zhang, D Chen, C Zuo, J Qin, H Wang, J Wang, ...
Journal of Biological Chemistry 289 (17), 11681-11694, 2014
|ChIP-Array: combinatory analysis of ChIP-seq/chip and microarray gene expression data to discover direct/indirect targets of a transcription factor|
J Qin, MJ Li, P Wang, MQ Zhang, J Wang
Nucleic acids research 39 (suppl_2), W430-W436, 2011
|Group sparse optimization via lp, q regularization|
Y Hu, C Li, K Meng, J Qin, X Yang
The Journal of Machine Learning Research 18 (1), 960-1011, 2017
|Inferring gene regulatory networks by integrating ChIP-seq/chip and transcriptome data via LASSO-type regularization methods|
J Qin, Y Hu, F Xu, HK Yalamanchili, J Wang
Methods 67 (3), 294-303, 2014
|Inhibition of KAP1 enhances hypoxia-induced Kaposi's sarcoma-associated herpesvirus reactivation through RBP-Jκ|
L Zhang, C Zhu, Y Guo, F Wei, J Lu, J Qin, S Banerjee, J Wang, H Shang, ...
Journal of virology 88 (12), 6873-6884, 2014
|The current status and challenges in computational analysis of genomic big data|
Y Qin, HK Yalamanchili, J Qin, B Yan, J Wang
Big data research 2 (1), 12-18, 2015
|NFATc2 enhances tumor-initiating phenotypes through the NFATc2/SOX2/ALDH axis in lung adenocarcinoma|
ZJ Xiao, J Liu, SQ Wang, Y Zhu, XY Gao, VPC Tin, J Qin, JW Wang, ...
Elife 6, e26733, 2017
|Transcriptional targets of TWIST1 in the cranial mesoderm regulate cell-matrix interactions and mesenchyme maintenance|
H Bildsoe, X Fan, EE Wilkie, A Ashoti, VJ Jones, M Power, J Qin, J Wang, ...
Developmental biology 418 (1), 189-203, 2016
|PTHGRN: unraveling post-translational hierarchical gene regulatory networks using PPI, ChIP-seq and gene expression data|
D Guan, J Shao, Z Zhao, P Wang, J Qin, Y Deng, KR Boheler, J Wang, ...
Nucleic acids research 42 (W1), W130-W136, 2014
|DDGni: dynamic delay gene-network inference from high-temporal data using gapped local alignment|
HK Yalamanchili, B Yan, MJ Li, J Qin, Z Zhao, FYL Chin, J Wang
Bioinformatics 30 (3), 377-383, 2014
|ChIP-Array 2: integrating multiple omics data to construct gene regulatory networks|
P Wang, J Qin, Y Qin, Y Zhu, LY Wang, MJ Li, MQ Zhang, J Wang
Nucleic acids research 43 (W1), W264-W269, 2015
|Activation of E-prostanoid 3 receptor in macrophages facilitates cardiac healing after myocardial infarction|
J Tang, Y Shen, G Chen, Q Wan, K Wang, J Zhang, J Qin, G Liu, S Zuo, ...
Nature communications 8 (1), 1-14, 2017
|EpiRegNet: constructing epigenetic regulatory network from high throughput gene expression data for humans|
LY Wang, P Wang, MJ Li, J Qin, X Wang, MQ Zhang, J Wang
Epigenetics 6 (12), 1505-1512, 2011
|An integrative method to decode regulatory logics in gene transcription|
B Yan, D Guan, C Wang, J Wang, B He, J Qin, KR Boheler, A Lu, G Zhang, ...
Nature communications 8 (1), 1-12, 2017
|Tissue interactions, cell signaling and transcriptional control in the cranial mesoderm during craniofacial development|
X Fan, DAF Loebel, H Bildsoe, EE Wilkie, J Qin, J Wang, PPL Tam
Aims Genetics 3 (01), 074-098, 2016
|Chronic Cardiovascular Disease-Associated Gene Network Analysis in Human Umbilical Vein Endothelial Cells Exposed to 2,3,7,8-Tetrachlorodibenzo-p-dioxin|
Y Yu, J Qin, D Chen, H Wang, J Wang, Y Yu
Cardiovascular toxicology 15 (2), 157-171, 2015
|Next generation genome sequencing reveals phylogenetic clades with different level of virulence among Salmonella Typhimurium clinical human isolates in Hong Kong|
CK Cheng, MK Cheung, W Nong, PTW Law, J Qin, JML Ling, KM Kam, ...
BMC genomics 16 (1), 1-8, 2015
|Proteomirexpress: inferring microrna and protein-centered regulatory networks from high-throughput proteomic and mRNA expression data|
J Qin, MJ Li, P Wang, NS Wong, MP Wong, Z Xia, GSW Tsao, MQ Zhang, ...
Molecular & Cellular Proteomics 12 (11), 3379-3387, 2013
|ENPD-a database of eukaryotic nucleic acid binding proteins: Linking gene regulations to proteins|
RW Tak Leung, X Jiang, KH Chu, J Qin
Nucleic acids research 47 (D1), D322-D329, 2019