|Integration of external signaling pathways with the core transcriptional network in embryonic stem cells|
X Chen, H Xu, P Yuan, F Fang, M Huss, VB Vega, E Wong, YL Orlov, ...
Cell 133 (6), 1106-1117, 2008
|Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics|
L Fagerberg, BM Hallström, P Oksvold, C Kampf, D Djureinovic, ...
Molecular & Cellular Proteomics 13 (2), 397-406, 2014
|Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst|
G Guo, M Huss, GQ Tong, C Wang, LL Sun, ND Clarke, P Robson
Developmental cell 18 (4), 675-685, 2010
|Visualization and analysis of gene expression in tissue sections by spatial transcriptomics|
PL Ståhl, F Salmén, S Vickovic, A Lundmark, JF Navarro, J Magnusson, ...
Science 353 (6294), 78-82, 2016
|Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity|
L Song, Z Zhang, LL Grasfeder, AP Boyle, PG Giresi, BK Lee, ...
Genome research 21 (10), 1757-1767, 2011
|Subnetwork hierarchies of biochemical pathways|
P Holme, M Huss, H Jeong
Bioinformatics 19 (4), 532-538, 2003
|The nuclear receptor Nr5a2 can replace Oct4 in the reprogramming of murine somatic cells to pluripotent cells|
JCD Heng, B Feng, J Han, J Jiang, P Kraus, JH Ng, YL Orlov, M Huss, ...
Cell stem cell 6 (2), 167-174, 2010
|A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity|
NY Chia, YS Chan, B Feng, X Lu, YL Orlov, D Moreau, P Kumar, L Yang, ...
Nature 468 (7321), 316-320, 2010
|Eset partners with Oct4 to restrict extraembryonic trophoblast lineage potential in embryonic stem cells|
P Yuan, J Han, G Guo, YL Orlov, M Huss, YH Loh, LP Yaw, P Robson, ...
Genes & development 23 (21), 2507-2520, 2009
|A primer on deep learning in genomics|
J Zou, M Huss, A Abid, P Mohammadi, A Torkamani, A Telenti
Nature genetics 51 (1), 12-18, 2019
|HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics|
RMM Branca, LM Orre, HJ Johansson, V Granholm, M Huss, ...
Nature methods 11 (1), 59, 2014
|Integrative model of genomic factors for determining binding site selection by estrogen receptor‐α|
R Joseph, YL Orlov, M Huss, W Sun, S Li Kong, L Ukil, Y Fu Pan, G Li, ...
Molecular systems biology 6 (1), 456, 2010
|The human gut microbiome as a transporter of antibiotic resistance genes between continents|
J Bengtsson-Palme, M Angelin, M Huss, S Kjellqvist, E Kristiansson, ...
Antimicrobial agents and chemotherapy 59 (10), 6551-6560, 2015
|Currency and commodity metabolites: their identification and relation to the modularity of metabolic networks|
M Huss, P Holme
IET systems biology 1 (5), 280-285, 2007
|Simple cellular and network control principles govern complex patterns of motor behavior|
A Kozlov, M Huss, A Lansner, JH Kotaleski, S Grillner
Proceedings of the National Academy of Sciences 106 (47), 20027-20032, 2009
|An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge|
CA Brownstein, AH Beggs, N Homer, B Merriman, WY Timothy, ...
Genome biology 15 (3), 1-18, 2014
|Reprogramming of Yersinia from virulent to persistent mode revealed by complex in vivo RNA-seq analysis|
K Avican, A Fahlgren, M Huss, AK Heroven, M Beckstette, P Dersch, ...
PLoS Pathog 11 (1), e1004600, 2015
|Q&A: ChIP-seq technologies and the study of gene regulation|
ET Liu, S Pott, M Huss
BMC biology 8 (1), 56, 2010
|The human skeletal muscle transcriptome: sex differences, alternative splicing, and tissue homogeneity assessed with RNA sequencing|
ME Lindholm, M Huss, BW Solnestam, S Kjellqvist, J Lundeberg, ...
The FASEB Journal 28 (10), 4571-4581, 2014
|Role-similarity based functional prediction in networked systems: application to the yeast proteome|
P Holme, M Huss
Journal of the Royal Society Interface 2 (4), 327-333, 2005