Matthieu Muffato
Matthieu Muffato
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The zebrafish reference genome sequence and its relationship to the human genome
K Howe, MD Clark, CF Torroja, J Torrance, C Berthelot, M Muffato, ...
Nature 496 (7446), 498-503, 2013
29872013
Ensembl 2018
DR Zerbino, P Achuthan, W Akanni, MR Amode, D Barrell, J Bhai, K Billis, ...
Nucleic acids research 46 (D1), D754-D761, 2018
21922018
Ensembl 2015
F Cunningham, MR Amode, D Barrell, K Beal, K Billis, S Brent, ...
Nucleic acids research 43 (D1), D662-D669, 2015
15302015
Ensembl 2014
P Flicek, MR Amode, D Barrell, K Beal, K Billis, S Brent, D Carvalho-Silva, ...
Nucleic acids research 42 (D1), D749-D755, 2014
14812014
Ensembl 2016
A Yates, W Akanni, MR Amode, D Barrell, K Billis, D Carvalho-Silva, ...
Nucleic acids research 44 (D1), D710-D716, 2016
14412016
Ensembl 2012
P Flicek, MR Amode, D Barrell, K Beal, S Brent, D Carvalho-Silva, ...
Nucleic acids research 40 (D1), D84-D90, 2012
11032012
Ensembl 2013
P Flicek, I Ahmed, MR Amode, D Barrell, K Beal, S Brent, ...
Nucleic acids research 41 (D1), D48-D55, 2012
10712012
Ensembl 2011
P Flicek, MR Amode, D Barrell, K Beal, S Brent, Y Chen, P Clapham, ...
Nucleic acids research 39 (suppl_1), D800-D806, 2010
8892010
Ensembl 2020
AD Yates, P Achuthan, W Akanni, J Allen, J Allen, J Alvarez-Jarreta, ...
Nucleic acids research 48 (D1), D682-D688, 2020
6022020
Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution
JJ Smith, S Kuraku, C Holt, T Sauka-Spengler, N Jiang, MS Campbell, ...
Nature genetics 45 (4), 415-421, 2013
5552013
Ensembl 2019
F Cunningham, P Achuthan, W Akanni, J Allen, MR Amode, IM Armean, ...
Nucleic acids research 47 (D1), D745-D751, 2019
5372019
Ensembl 2017
BL Aken, P Achuthan, W Akanni, MR Amode, F Bernsdorff, J Bhai, K Billis, ...
Nucleic acids research 45 (D1), D635-D642, 2017
4912017
Ensembl comparative genomics resources
J Herrero, M Muffato, K Beal, S Fitzgerald, L Gordon, M Pignatelli, ...
Database 2016, 2016
3562016
Gibbon genome and the fast karyotype evolution of small apes
L Carbone, RA Harris, S Gnerre, KR Veeramah, B Lorente-Galdos, ...
Nature 513 (7517), 195-201, 2014
2662014
Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate
F Denoeud, S Henriet, S Mungpakdee, JM Aury, C Da Silva, H Brinkmann, ...
Science 330 (6009), 1381-1385, 2010
2612010
Genomicus: a database and a browser to study gene synteny in modern and ancestral genomes
M Muffato, A Louis, CE Poisnel, HR Crollius
Bioinformatics 26 (8), 1119-1121, 2010
2082010
Standardized benchmarking in the quest for orthologs
AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ...
Nature methods 13 (5), 425-430, 2016
1632016
Ensembl Genomes 2020—enabling non-vertebrate genomic research
KL Howe, B Contreras-Moreira, N De Silva, G Maslen, W Akanni, J Allen, ...
Nucleic acids research 48 (D1), D689-D695, 2020
1552020
Genomicus: five genome browsers for comparative genomics in eukaryota
A Louis, M Muffato, H Roest Crollius
Nucleic acids research 41 (D1), D700-D705, 2012
1452012
Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference
G Tan, M Muffato, C Ledergerber, J Herrero, N Goldman, M Gil, ...
Systematic biology 64 (5), 778-791, 2015
1362015
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