| Unicycler: resolving bacterial genome assemblies from short and long sequencing reads RR Wick, LM Judd, CL Gorrie, KE Holt PLoS computational biology 13 (6), e1005595, 2017 | 5277 | 2017 |
| Bandage: interactive visualization of de novo genome assemblies RR Wick, MB Schultz, J Zobel, KE Holt Bioinformatics 31 (20), 3350-3352, 2015 | 1774 | 2015 |
| Performance of neural network basecalling tools for Oxford Nanopore sequencing RR Wick, LM Judd, KE Holt Genome biology 20, 1-10, 2019 | 1027 | 2019 |
| Completing bacterial genome assemblies with multiplex MinION sequencing RR Wick, LM Judd, CL Gorrie, KE Holt Microbial genomics 3 (10), e000132, 2017 | 676* | 2017 |
| Identification of Klebsiella capsule synthesis loci from whole genome data KL Wyres, RR Wick, C Gorrie, A Jenney, R Follador, NR Thomson, ... Microbial genomics 2 (12), e000102, 2016 | 458* | 2016 |
| Gastrointestinal carriage is a major reservoir of Klebsiella pneumoniae infection in intensive care patients CL Gorrie, M Mirčeta, RR Wick, DJ Edwards, NR Thomson, RA Strugnell, ... Clinical infectious diseases 65 (2), 208-215, 2017 | 457 | 2017 |
| A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex MMC Lam, RR Wick, SC Watts, LT Cerdeira, KL Wyres, KE Holt Nature communications 12 (1), 4188, 2021 | 454 | 2021 |
| Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations MMC Lam, RR Wick, KL Wyres, CL Gorrie, LM Judd, AWJ Jenney, ... Microbial genomics 4 (9), e000196, 2018 | 309 | 2018 |
| Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae KL Wyres, RR Wick, LM Judd, R Froumine, A Tokolyi, CL Gorrie, ... PLoS genetics 15 (4), e1008114, 2019 | 261 | 2019 |
| Kaptive Web: user-friendly capsule and lipopolysaccharide serotype prediction for Klebsiella genomes RR Wick, E Heinz, KE Holt, KL Wyres Journal of clinical microbiology 56 (6), 10.1128/jcm. 00197-18, 2018 | 246 | 2018 |
| Benchmarking of long-read assemblers for prokaryote whole genome sequencing RR Wick, KE Holt F1000Research 8, 2019 | 228 | 2019 |
| Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination MMC Lam, KL Wyres, S Duchêne, RR Wick, LM Judd, YH Gan, CH Hoh, ... Nature communications 9 (1), 2703, 2018 | 228 | 2018 |
| Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes N De Maio, LP Shaw, A Hubbard, S George, ND Sanderson, J Swann, ... Microbial genomics 5 (9), e000294, 2019 | 226 | 2019 |
| Polypolish: short-read polishing of long-read bacterial genome assemblies RR Wick, KE Holt PLoS computational biology 18 (1), e1009802, 2022 | 219 | 2022 |
| Trycycler: consensus long-read assemblies for bacterial genomes RR Wick, LM Judd, LT Cerdeira, J Hawkey, G Méric, B Vezina, KL Wyres, ... Genome biology 22, 1-17, 2021 | 201 | 2021 |
| Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks RR Wick, LM Judd, KE Holt PLoS computational biology 14 (11), e1006583, 2018 | 182 | 2018 |
| Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae MMC Lam, KL Wyres, LM Judd, RR Wick, A Jenney, S Brisse, KE Holt Genome medicine 10, 1-15, 2018 | 179 | 2018 |
| Microbial mercury methylation in Antarctic sea ice CM Gionfriddo, MT Tate, RR Wick, MB Schultz, A Zemla, MP Thelen, ... Nature microbiology 1 (10), 1-12, 2016 | 164 | 2016 |
| Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307 KL Wyres, J Hawkey, MAK Hetland, A Fostervold, RR Wick, LM Judd, ... Journal of Antimicrobial Chemotherapy 74 (3), 577-581, 2019 | 154 | 2019 |
| ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data J Hawkey, M Hamidian, RR Wick, DJ Edwards, H Billman-Jacobe, ... BMC genomics 16, 1-11, 2015 | 135 | 2015 |
Kathryn HoltLSHTM & Monash UniversityAdresse e-mail validée de lshtm.ac.uk
