Anna Zhukova
Title
Cited by
Cited by
Year
Modeling sample variables with an Experimental Factor Ontology
J Malone, E Holloway, T Adamusiak, M Kapushesky, J Zheng, ...
Bioinformatics 26 (8), 1112-1118, 2010
3732010
Controlled vocabularies and semantics in systems biology
M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ...
Molecular systems biology 7 (1), 543, 2011
2442011
Toward community standards and software for whole-cell modeling
D Waltemath, JR Karr, FT Bergmann, V Chelliah, M Hucka, M Krantz, ...
IEEE Transactions on Biomedical Engineering 63 (10), 2007-2014, 2016
432016
Genome-wide transcriptional start site mapping and sRNA identification in the pathogen Leptospira interrogans
A Zhukova, LG Fernandes, P Hugon, CJ Pappas, O Sismeiro, JY Coppée, ...
Frontiers in cellular and infection microbiology 7, 10, 2017
272017
Pantograph: A template-based method for genome-scale metabolic model reconstruction
N Loira, A Zhukova, DJ Sherman
Journal of bioinformatics and computational biology 13 (02), 1550006, 2015
212015
A fast likelihood method to reconstruct and visualize ancestral scenarios
SA Ishikawa, A Zhukova, W Iwasaki, O Gascuel
Molecular biology and evolution 36 (9), 2069-2085, 2019
202019
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular Systems Biology 16 (8), e9110, 2020
72020
Knowledge-based generalization of metabolic models
A Zhukova, DJ Sherman
Journal of Computational Biology 21 (7), 534-547, 2014
52014
The role of phylogenetics as a tool to predict the spread of resistance
A Zhukova, T Cutino-Moguel, O Gascuel, D Pillay
The Journal of Infectious Diseases 216 (suppl_9), S820-S823, 2017
32017
Mimoza: web-based semantic zooming and navigation in metabolic networks
A Zhukova, DJ Sherman
BMC systems biology 9 (1), 1-13, 2015
32015
LibKiSAO: a Java library for Querying KiSAO
A Zhukova, R Adams, C Laibe, N Le Novere
BMC research notes 5 (1), 520, 2012
22012
Efficiently Analysing Large Viral Data Sets in Computational Phylogenomics
A Zhukova, O Gascuel, S Duchene, D Ayres, P Lemey, G Baele
Phylogenetics in the Genomic Era, 5.3: 1--5.3: 43, 2020
12020
Knowledge-based generalization of metabolic networks: a practical study
A Zhukova, DJ Sherman
Journal of Bioinformatics and Computational Biology 12 (02), 1441001, 2014
12014
The seventh pandemic of cholera in Europe revisited by microbial genomics
M Oprea, E Njamkepo, D Cristea, A Zhukova, CG Clark, AN Kravetz, ...
Nature Communications 11 (1), 5347, 2020
2020
The mitochondrion metabolic model iAS253 revisited.
A Zhukova, JP Mazat
advances in Systems and Synthetic Biology, 2015
2015
Kinetic Simulation Algorithm Ontology
A Zhukova, D Waltemath, N Juty, C Laibe, N Le Novčre
Nature Precedings, 1-1, 2011
2011
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Articles 1–16