Anna Zhukova
TitleCited byYear
Modeling sample variables with an Experimental Factor Ontology
J Malone, E Holloway, T Adamusiak, M Kapushesky, J Zheng, ...
Bioinformatics 26 (8), 1112-1118, 2010
2802010
Controlled vocabularies and semantics in systems biology
M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ...
Molecular systems biology 7 (1), 2011
2122011
Toward community standards and software for whole-cell modeling
D Waltemath, JR Karr, FT Bergmann, V Chelliah, M Hucka, M Krantz, ...
IEEE Transactions on Biomedical Engineering 63 (10), 2007-2014, 2016
342016
Genome-wide transcriptional start site mapping and sRNA identification in the pathogen Leptospira interrogans
A Zhukova, LG Fernandes, P Hugon, CJ Pappas, O Sismeiro, JY Coppée, ...
Frontiers in cellular and infection microbiology 7, 10, 2017
152017
Pantograph: A template-based method for genome-scale metabolic model reconstruction
N Loira, A Zhukova, DJ Sherman
Journal of bioinformatics and computational biology 13 (02), 1550006, 2015
152015
Knowledge-based generalization of metabolic models
A Zhukova, DJ Sherman
Journal of Computational Biology 21 (7), 534-547, 2014
52014
A fast likelihood method to reconstruct and visualize ancestral scenarios
SA Ishikawa, A Zhukova, W Iwasaki, O Gascuel
Molecular biology and evolution 36 (9), 2069-2085, 2019
42019
The role of phylogenetics as a tool to predict the spread of resistance
A Zhukova, T Cutino-Moguel, O Gascuel, D Pillay
The Journal of Infectious Diseases 216 (suppl_9), S820-S823, 2017
32017
Mimoza: web-based semantic zooming and navigation in metabolic networks
A Zhukova, DJ Sherman
BMC systems biology 9 (1), 10, 2015
22015
Knowledge-based generalization of metabolic networks: a practical study
A Zhukova, DJ Sherman
Journal of bioinformatics and computational biology 12 (02), 1441001, 2014
12014
LibKiSAO: a Java library for Querying KiSAO
A Zhukova, R Adams, C Laibe, N Le Novere
BMC research notes 5 (1), 520, 2012
12012
The mitochondrion metabolic model iAS253 revisited.
A Zhukova, JP Mazat
advances in Systems and Synthetic Biology, 2015
2015
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Articles 1–12