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Jason A Hilton
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The Encyclopedia of DNA elements (ENCODE): data portal update
CA Davis, BC Hitz, CA Sloan, ET Chan, JM Davidson, I Gabdank, ...
Nucleic acids research 46 (D1), D794-D801, 2017
16912017
The International Human Epigenome Consortium: a blueprint for scientific collaboration and discovery
HG Stunnenberg, S Abrignani, D Adams, M de Almeida, L Altucci, V Amin, ...
Cell 167 (5), 1145-1149, 2016
5052016
New developments on the Encyclopedia of DNA Elements (ENCODE) data portal
Y Luo, BC Hitz, I Gabdank, JA Hilton, MS Kagda, B Lam, Z Myers, P Sud, ...
Nucleic acids research, 2019
3982019
Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton
ML Cuvelier, AE Allen, A Monier, JP McCrow, M Messié, SG Tringe, ...
Proceedings of the National Academy of Sciences 107 (33), 14679-14684, 2010
3052010
Genomic deletions disrupt nitrogen metabolism pathways of a cyanobacterial diatom symbiont
JA Hilton, RA Foster, HJ Tripp, BJ Carter, JP Zehr, TA Villareal
Nature communications 4, 1767, 2013
1142013
Nitrogen fixation in the South Atlantic Gyre and the Benguela upwelling system
JA Sohm, JA Hilton, AE Noble, JP Zehr, MA Saito, EA Webb
Geophysical Research Letters 38 (16), 2011
962011
Principles of metadata organization at the ENCODE data coordination center
EL Hong, CA Sloan, ET Chan, JM Davidson, VS Malladi, JS Strattan, ...
Database 2016, 2016
582016
Metatranscriptomics of N2-fixing cyanobacteria in the Amazon River plume
JA Hilton, BM Satinsky, M Doherty, B Zielinski, JP Zehr
The ISME journal 9 (7), 1557-1569, 2015
342015
Mondo: Unifying diseases for the world, by the world
NA Vasilevsky, NA Matentzoglu, S Toro, JE Flack IV, H Hegde, DR Unni, ...
medRxiv, 2022.04. 13.22273750, 2022
332022
The ENCODE portal as an epigenomics resource
J Jou, I Gabdank, Y Luo, K Lin, P Sud, Z Myers, JA Hilton, MS Kagda, ...
Current protocols in bioinformatics 68 (1), e89, 2019
252019
Ecology and evolution of diatom-associated cyanobacteria through genetic analyses
JA Hilton
University of California, Santa Cruz, 2014
222014
Surveying DNA Elements within Functional Genes of Heterocyst-Forming Cyanobacteria
JA Hilton, JC Meeks, JP Zehr
PloS one 11 (5), e0156034, 2016
172016
SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata
BC Hitz, LD Rowe, NR Podduturi, DI Glick, UK Baymuradov, VS Malladi, ...
PloS one 12 (4), e0175310, 2017
152017
Prevention of data duplication for high throughput sequencing repositories
I Gabdank, ET Chan, JM Davidson, JA Hilton, CA Davis, UK Baymuradov, ...
Database 2018, 2018
82018
Matrix and analysis metadata standards (MAMS) to facilitate harmonization and reproducibility of single-cell data
Y Wang, I Sarfraz, WK Teh, A Sokolov, BR Herb, HH Creasy, I Virshup, ...
bioRxiv, 2023.03. 06.531314, 2023
22023
CZ CELLxGENE Discover: A single-cell data platform for scalable exploration, analysis and modeling of aggregated data
CZI Single-Cell Biology, S Abdulla, B Aevermann, P Assis, S Badajoz, ...
bioRxiv, 2023.10. 30.563174, 2023
12023
Ecological aspects of nitrogen-fixing cyanobacteria illuminated by genomics and metagenomics
JP Zehr, HJ Tripp, J Hilton, PH Moisander, R Foster
Journal of Phycology 47 (Suppl. 2 Sp. Iss. SI), S1-S1, 2011
12011
ENCODE data standards maximize quality and use of high-throughput genomic data
Y Luo, I Gabdank, JA Hilton, WW Zhong, KZ Lin, J Jou, P Sud, ZA Myers, ...
F1000Research 8, 2019
2019
The ENCODE Annotation Pipeline: Standard analyses for ChIP-seq, RNA-seq, DNase-seq, and whole-genome bisulfite experiments
JS Strattan, TR Dreszer, BC Hitz, ET Chan, JM Davidson, I Gabdank, ...
F1000Research 6, 2017
2017
A searchable catalogue of validated antibodies used in the ENCODE project
ET Chan, JA Hilton, KC Onate, I Gabdank, M Ho, AK Narayanan, ...
F1000Research 6, 2017
2017
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Articles 1–20