|Mitophagy-dependent necroptosis contributes to the pathogenesis of COPD|
K Mizumura, SM Cloonan, K Nakahira, AR Bhashyam, M Cervo, T Kitada, ...
The Journal of clinical investigation 124 (9), 3987-4003, 2014
|CpG methylation of half-CRE sequences creates C/EBPα binding sites that activate some tissue-specific genes|
V Rishi, P Bhattacharya, R Chatterjee, J Rozenberg, J Zhao, K Glass, ...
Proceedings of the National Academy of Sciences 107 (47), 20311-20316, 2010
|Combinatorial assembly of developmental stage-specific enhancers controls gene expression programs during human erythropoiesis|
J Xu, Z Shao, K Glass, DE Bauer, L Pinello, B Van Handel, S Hou, ...
Developmental cell 23 (4), 796-811, 2012
|KDM4A lysine demethylase induces site-specific copy gain and rereplication of regions amplified in tumors|
JC Black, AL Manning, C Van Rechem, J Kim, B Ladd, J Cho, CM Pineda, ...
Cell 154 (3), 541-555, 2013
|ETV1 directs androgen metabolism and confers aggressive prostate cancer in targeted mice and patients|
E Baena, Z Shao, DE Linn, K Glass, MJ Hamblen, Y Fujiwara, J Kim, ...
Genes & development 27 (6), 683-698, 2013
|Understanding tissue-specific gene regulation|
AR Sonawane, J Platig, M Fagny, CY Chen, JN Paulson, ...
Cell reports 21 (4), 1077-1088, 2017
|Mitochondrial iron chelation ameliorates cigarette smoke–induced bronchitis and emphysema in mice|
SM Cloonan, K Glass, ME Laucho-Contreras, AR Bhashyam, M Cervo, ...
Nature medicine 22 (2), 163-174, 2016
|Developmental control of polycomb subunit composition by GATA factors mediates a switch to non-canonical functions|
J Xu, Z Shao, D Li, H Xie, W Kim, J Huang, JE Taylor, L Pinello, K Glass, ...
Molecular cell 57 (2), 304-316, 2015
|Passing messages between biological networks to refine predicted interactions|
K Glass, C Huttenhower, J Quackenbush, GC Yuan
PloS one 8 (5), e64832, 2013
|All and only CpG containing sequences are enriched in promoters abundantly bound by RNA polymerase II in multiple tissues|
JM Rozenberg, A Shlyakhtenko, K Glass, V Rishi, MV Myakishev, ...
BMC genomics 9 (1), 1-13, 2008
|Annotation enrichment analysis: an alternative method for evaluating the functional properties of gene sets|
K Glass, M Girvan
Scientific reports 4, 2014
|A network model for angiogenesis in ovarian cancer|
K Glass, J Quackenbush, D Spentzos, B Haibe-Kains, GC Yuan
BMC bioinformatics 16 (1), 1-17, 2015
|DNA methylation profiling in human lung tissue identifies genes associated with COPD|
JD Morrow, MH Cho, CP Hersh, V Pinto-Plata, B Celli, N Marchetti, ...
Epigenetics 11 (10), 730-739, 2016
|Haploinsufficiency of Hedgehog interacting protein causes increased emphysema induced by cigarette smoke through network rewiring|
T Lao, K Glass, W Qiu, F Polverino, K Gupta, J Morrow, JD Mancini, ...
Genome medicine 7 (1), 1-13, 2015
|Exploring regulation in tissues with eQTL networks|
M Fagny, JN Paulson, ML Kuijjer, AR Sonawane, CY Chen, ...
Proceedings of the National Academy of Sciences 114 (37), E7841-E7850, 2017
|Functional interactors of three genome-wide association study genes are differentially expressed in severe chronic obstructive pulmonary disease lung tissue|
JD Morrow, X Zhou, T Lao, Z Jiang, DL DeMeo, MH Cho, W Qiu, ...
Scientific reports 7, 44232, 2017
|Sexually-dimorphic targeting of functionally-related genes in COPD|
K Glass, J Quackenbush, EK Silverman, B Celli, SI Rennard, GC Yuan, ...
BMC systems biology 8 (1), 1-17, 2014
|Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data|
JN Paulson, CY Chen, CM Lopes-Ramos, ML Kuijjer, J Platig, ...
BMC Bioinformatics 18 (1), 437, 2017
|Estimating sample-specific regulatory networks|
ML Kuijjer, M Tung, GC Yuan, J Quackenbush, K Glass
Available at SSRN 3253573, 2018
|Sex-Based Genetic Association Study Identifies CELSR1 as a Possible Chronic Obstructive Pulmonary Disease Risk Locus among Women|
M Hardin, MH Cho, S Sharma, K Glass, PJ Castaldi, ML McDonald, ...
American journal of respiratory cell and molecular biology 56 (3), 332-341, 2017