Alicia Oshlack
Alicia Oshlack
Peter MacCallum Cancer Centre
Verified email at petermac.org - Homepage
Title
Cited by
Cited by
Year
A scaling normalization method for differential expression analysis of RNA-seq data
MD Robinson, A Oshlack
Genome biology 11 (3), 1-9, 2010
40312010
Gene ontology analysis for RNA-seq: accounting for selection bias
MD Young, MJ Wakefield, GK Smyth, A Oshlack
Genome biology 11 (2), R14, 2010
28452010
A comparison of background correction methods for two-colour microarrays
ME Ritchie, J Silver, A Oshlack, M Holmes, D Diyagama, A Holloway, ...
Bioinformatics 23 (20), 2700-2707, 2007
9892007
From RNA-seq reads to differential expression results
A Oshlack, MD Robinson, MD Young
Genome biology 11 (12), 220, 2010
7362010
SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips
J Maksimovic, L Gordon, A Oshlack
Genome biology 13 (6), R44, 2012
5842012
Transcript length bias in RNA-seq data confounds systems biology
A Oshlack, MJ Wakefield
Biology direct 4 (1), 14, 2009
5252009
Expression profiling in primates reveals a rapid evolution of human transcription factors
Y Gilad, A Oshlack, GK Smyth, TP Speed, KP White
Nature 440 (7081), 242-245, 2006
3372006
ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity
MD Young, TA Willson, MJ Wakefield, E Trounson, DJ Hilton, ME Blewitt, ...
Nucleic acids research 39 (17), 7415-7427, 2011
2532011
Array-based gene discovery with three unrelated subjects shows SCARB2/LIMP-2 deficiency causes myoclonus epilepsy and glomerulosclerosis
SF Berkovic, LM Dibbens, A Oshlack, JD Silver, M Katerelos, DF Vears, ...
The American Journal of Human Genetics 82 (3), 673-684, 2008
2482008
Corset: enabling differential gene expression analysis for de novo assembled transcriptomes
NM Davidson, A Oshlack
Genome biology 15 (7), 1-14, 2014
2302014
A prospective evaluation of whole-exome sequencing as a first-tier molecular test in infants with suspected monogenic disorders
Z Stark, TY Tan, B Chong, GR Brett, P Yap, M Walsh, A Yeung, H Peters, ...
Genetics in Medicine 18 (11), 1090-1096, 2016
1982016
Natural selection on gene expression
Y Gilad, A Oshlack, SA Rifkin
TRENDS in Genetics 22 (8), 456-461, 2006
1982006
missMethyl: an R package for analyzing data from Illumina’s HumanMethylation450 platform
B Phipson, J Maksimovic, A Oshlack
Bioinformatics 32 (2), 286-288, 2016
1972016
Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips
W Shi, A Oshlack, GK Smyth
Nucleic acids research 38 (22), e204-e204, 2010
1952010
Splatter: simulation of single-cell RNA sequencing data
L Zappia, B Phipson, A Oshlack
Genome biology 18 (1), 1-15, 2017
1802017
Gene regulation in primates evolves under tissue-specific selection pressures
R Blekhman, A Oshlack, AE Chabot, GK Smyth, Y Gilad
PLoS Genet 4 (11), e1000271, 2008
1462008
Diagnostic impact and cost-effectiveness of whole-exome sequencing for ambulant children with suspected monogenic conditions
TY Tan, OJ Dillon, Z Stark, D Schofield, K Alam, R Shrestha, B Chong, ...
JAMA pediatrics 171 (9), 855-862, 2017
1392017
Disorders of sex development: insights from targeted gene sequencing of a large international patient cohort
S Eggers, S Sadedin, JA Van Den Bergen, G Robevska, T Ohnesorg, ...
Genome biology 17 (1), 1-21, 2016
1362016
Bpipe: a tool for running and managing bioinformatics pipelines
SP Sadedin, B Pope, A Oshlack
Bioinformatics 28 (11), 1525-1526, 2012
1292012
Identification of recurrent FGFR3 fusion genes in lung cancer through kinome‐centred RNA sequencing
IJ Majewski, L Mittempergher, NM Davidson, A Bosma, SM Willems, ...
The Journal of pathology 230 (3), 270-276, 2013
1192013
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Articles 1–20