| Method Gene ontology analysis for RNA-seq: accounting for selection bias MD Young, MJ Wakefield, GK Smyth, A Oshlack | 3221* | 2010 |
| From RNA-seq reads to differential expression results A Oshlack, MD Robinson, MD Young Genome biology 11 (12), 220, 2010 | 764 | 2010 |
| ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity MD Young, TA Willson, MJ Wakefield, E Trounson, DJ Hilton, ME Blewitt, ... Nucleic Acids Research 39 (17), 7415-7427, 2011 | 262 | 2011 |
| Intra-tumour diversification in colorectal cancer at the single-cell level SF Roerink, N Sasaki, H Lee-Six, MD Young, LB Alexandrov, S Behjati, ... Nature 556 (7702), 457-462, 2018 | 200 | 2018 |
| Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors MD Young, TJ Mitchell, FAV Braga, MGB Tran, BJ Stewart, JR Ferdinand, ... Science 361 (6402), 594-599, 2018 | 171 | 2018 |
| Global changes in the mammary epigenome are induced by hormonal cues and coordinated by Ezh2 B Pal, T Bouras, W Shi, F Vaillant, JM Sheridan, N Fu, K Breslin, K Jiang, ... Cell reports 3 (2), 411-426, 2013 | 113 | 2013 |
| Recurrent mutation of IGF signalling genes and distinct patterns of genomic rearrangement in osteosarcoma S Behjati, PS Tarpey, K Haase, H Ye, MD Young, LB Alexandrov, ... Nature communications 8 (1), 1-8, 2017 | 102 | 2017 |
| Decoding human fetal liver haematopoiesis. DM Popescu, RA Botting, E Stephenson, K Green, S Webb, L Jardine, ... Springer Nature, 2019 | 88 | 2019 |
| Decoding human fetal liver haematopoiesis DM Popescu, RA Botting, E Stephenson, K Green, S Webb, L Jardine, ... Nature 574 (7778), 365-371, 2019 | 88 | 2019 |
| Decoding human fetal liver haematopoiesis DM Popescu, RA Botting, E Stephenson, K Green, S Webb, L Jardine, ... Nature 574 (7778), 365-371, 2019 | 88 | 2019 |
| BBKNN: fast batch alignment of single cell transcriptomes K Polański, MD Young, Z Miao, KB Meyer, SA Teichmann, JE Park Bioinformatics 36 (3), 964-965, 2020 | 86 | 2020 |
| goseq: Gene Ontology testing for RNA-seq datasets MD Young, MJ Wakefield, GK Smyth, A Oshlack | 68 | 2011 |
| SoupX removes ambient RNA contamination from droplet based single cell RNA sequencing data MD Young, S Behjati bioRxiv, 303727, 2018 | 63 | 2018 |
| Spatiotemporal immune zonation of the human kidney BJ Stewart, JR Ferdinand, MD Young, TJ Mitchell, KW Loudon, AM Riding, ... Science 365 (6460), 1461-1466, 2019 | 60 | 2019 |
| Spatiotemporal immune zonation of the human kidney B Stewart, J Ferdinand, M Young, T Mitchell, K Loudon, A Riding, ... Science 365 (6460), 1461-1466, 2019 | 60 | 2019 |
| Rearrangement bursts generate canonical gene fusions in bone and soft tissue tumors ND Anderson, R de Borja, MD Young, F Fuligni, A Rosic, ND Roberts, ... Science 361 (6405), 2018 | 58 | 2018 |
| Recurrent rearrangements of FOS and FOSB define osteoblastoma MW Fittall, W Mifsud, N Pillay, H Ye, AC Strobl, A Verfaillie, ... Nature communications 9 (1), 1-6, 2018 | 47 | 2018 |
| The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis JW Li, K Robison, M Martin, A Sjödin, B Usadel, M Young, EC Olivares, ... Nucleic acids research 40 (D1), D1313-D1317, 2012 | 43 | 2012 |
| The driver landscape of sporadic chordoma PS Tarpey, S Behjati, MD Young, I Martincorena, LB Alexandrov, ... Nature communications 8 (1), 1-6, 2017 | 42 | 2017 |
| Dependence of fragmentation in self-gravitating accretion discs on small-scale structure MD Young, CJ Clarke Monthly Notices of the Royal Astronomical Society 451 (4), 3987-3994, 2015 | 33 | 2015 |
