Giulia Palermo
Giulia Palermo
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Allostery in its many disguises: from theory to applications
SJ Wodak, E Paci, NV Dokholyan, IN Berezovsky, A Horovitz, J Li, ...
Structure 27 (4), 566-578, 2019
Catalytic metal ions and enzymatic processing of DNA and RNA
G Palermo, A Cavalli, ML Klein, M Alfonso-Prieto, M Dal Peraro, ...
Accounts of chemical research 48 (2), 220-228, 2015
CRISPR-Cas9 conformational activation as elucidated from enhanced molecular simulations
G Palermo, Y Miao, RC Walker, M Jinek, JA McCammon
Proceedings of the National Academy of Sciences 114 (28), 7260-7265, 2017
Valence and conduction band tuning in halide perovskites for solar cell applications
S Meloni, G Palermo, N Ashari-Astani, M Grätzel, U Rothlisberger
Journal of Materials Chemistry A 4 (41), 15997-16002, 2016
Fighting cancer with transition metal complexes: from naked DNA to protein and chromatin targeting strategies
G Palermo, A Magistrato, T Riedel, T Von Erlach, CA Davey, PJ Dyson, ...
ChemMedChem 11 (12), 1199, 2016
Striking plasticity of CRISPR-Cas9 and key role of non-target DNA, as revealed by molecular simulations
G Palermo, Y Miao, RC Walker, M Jinek, JA McCammon
ACS central science 2 (10), 756-763, 2016
Protospacer Adjacent Motif-Induced Allostery Activates CRISPR-Cas9
G Palermo, CG Ricci, A Fernando, R Basak, M Jinek, I Rivalta, ...
Journal of the American Chemical Society, 2017
Effect of Electronegative Substituents and Angular Dependence on the Heteronuclear Spin−Spin Coupling Constant 3JC−H: An Empirical Prediction Equation …
G Palermo, R Riccio, G Bifulco
The Journal of organic chemistry 75 (6), 1982-1991, 2010
Who activates the nucleophile in ribozyme catalysis? An answer from the splicing mechanism of group II introns
L Casalino, G Palermo, U Rothlisberger, A Magistrato
Journal of the American Chemical Society 138 (33), 10374-10377, 2016
Key role of the REC lobe during CRISPR–Cas9 activation by ‘sensing’,‘regulating’, and ‘locking’the catalytic HNH domain
G Palermo, JS Chen, CG Ricci, I Rivalta, M Jinek, VS Batista, JA Doudna, ...
Quarterly reviews of biophysics 51, 2018
Deciphering off-target effects in CRISPR-Cas9 through accelerated molecular dynamics
CG Ricci, JS Chen, Y Miao, M Jinek, JA Doudna, JA McCammon, ...
ACS central science 5 (4), 651-662, 2019
Allosteric cross-talk in chromatin can mediate drug-drug synergy
Z Adhireksan*, G Palermo*, T Riedel*, Z Ma, R Muhammad, ...
Nature Communications 8, 2017
Molecular simulations highlight the role of metals in catalysis and inhibition of type II topoisomerase
G Palermo, M Stenta, A Cavalli, M Dal Peraro, M De Vivo
Journal of chemical theory and computation 9 (2), 857-862, 2013
All-atom simulations disentangle the functional dynamics underlying gene maturation in the intron lariat spliceosome
L Casalino, G Palermo, A Spinello, U Rothlisberger, A Magistrato
Proceedings of the National Academy of Sciences 115 (26), 6584-6589, 2018
Computational insights into function and inhibition of fatty acid amide hydrolase
G Palermo, U Rothlisberger, A Cavalli, M De Vivo
European journal of medicinal chemistry 91, 15-26, 2015
Development of Site-specific Mg2+-RNA Force Field Parameters: A Dream or Reality? Guidelines from Combined Molecular Dynamics and Quantum Mechanics Simulations
L Casalino, G Palermo, N Abdurakhmonova, U Rothlisberger, ...
Journal of Chemical Theory and Computation 13 (1), 340-352, 2017
Covalent inhibitors of fatty acid amide hydrolase: a rationale for the activity of piperidine and piperazine aryl ureas
G Palermo, D Branduardi, M Masetti, A Lodola, M Mor, D Piomelli, ...
Journal of medicinal chemistry 54 (19), 6612-6623, 2011
Keys to lipid selection in fatty acid amide hydrolase catalysis: structural flexibility, gating residues and multiple binding pockets
G Palermo, I Bauer, P Campomanes, A Cavalli, A Armirotti, S Girotto, ...
PLoS computational biology 11 (6), e1004231, 2015
An optimized polyamine moiety boosts the potency of human type II topoisomerase poisons as quantified by comparative analysis centered on the clinical candidate F14512
G Palermo, E Minniti, ML Greco, L Riccardi, E Simoni, M Convertino, ...
Chemical communications 51 (76), 14310-14313, 2015
Allosteric Motions of the CRISPR–Cas9 HNH Nuclease Probed by NMR and Molecular Dynamics
KD East, JC Newton, UN Morzan, B Narkhede, Yogesh, A Acharya, ...
Journal of the American Chemical Society 142 (3), 1348-1358, 2020
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