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Nicolas Rodrigue
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PhyloBayes MPI. Phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment
N Lartillot, N Rodrigue, D Stubbs, J Richer
Systematic Biology 62 (4), 611-615, 2013
7292013
Heterotachy and long-branch attraction in phylogenetics
H Philippe, Y Zhou, H Brinkmann, N Rodrigue, F Delsuc
BMC evolutionary biology 5, 1-8, 2005
3232005
Genomics of Adaptation during Experimental Evolution of the Opportunistic Pathogen Pseudomonas aeruginosa
A Wong, N Rodrigue, R Kassen
Public Library of Science 8 (9), e1002928, 2012
2012012
Evolutionary insight from whole‐genome sequencing of experimentally evolved microbes
JR Dettman, N Rodrigue, AH Melnyk, A Wong, SF Bailey, R Kassen
Molecular ecology 21 (9), 2058-2077, 2012
1892012
Mutation-selection models of coding sequence evolution with site-heterogeneous amino acid fitness profiles
N Rodrigue, H Philippe, N Lartillot
Proceedings of the National Academy of Sciences 107 (10), 4629-4634, 2010
1532010
Evolutionary genomics of epidemic and nonepidemic strains of Pseudomonas aeruginosa
JR Dettman, N Rodrigue, SD Aaron, R Kassen
Proceedings of the National Academy of Sciences 110 (52), 21065–21070, 2013
1372013
The effect of selection environment on the probability of parallel evolution
SF Bailey, N Rodrigue, R Kassen
Molecular biology and evolution 32 (6), 1436-1448, 2015
1352015
Site interdependence attributed to tertiary structure in amino acid sequence evolution
N Rodrigue, N Lartillot, D Bryant, H Philippe
Gene 347 (2), 207-217, 2005
1202005
Assessing site-interdependent phylogenetic models of sequence evolution
N Rodrigue, H Philippe, N Lartillot
Molecular biology and evolution 23 (9), 1762-1775, 2006
902006
Clonal evolution and genome stability in a 2500-year-old fungal individual
JB Anderson, JN Bruhn, D Kasimer, H Wang, N Rodrigue, ML Smith
Proceedings of the Royal Society B 285 (1893), 20182233, 2018
712018
Whole genome sequencing and comparative genomics of closely related Fusarium Head Blight fungi: Fusarium graminearum, F. meridionale and F. asiaticum
S Walkowiak, O Rowland, N Rodrigue, R Subramaniam
BMC genomics 17, 1-15, 2016
712016
Site-heterogeneous mutation-selection models within the PhyloBayes-MPI package
N Rodrigue, N Lartillot
Bioinformatics 30 (7), 1020-1021, 2014
662014
Computational methods for evaluating phylogenetic models of coding sequence evolution with dependence between codons
N Rodrigue, CL Kleinman, H Philippe, N Lartillot
Molecular Biology and Evolution 26 (7), 1663-1676, 2009
612009
Evaluation of the models handling heterotachy in phylogenetic inference
Y Zhou, N Rodrigue, N Lartillot, H Philippe
BMC Evolutionary Biology 7, 1-13, 2007
612007
Microevolution of symbiotic Bradyrhizobium populations associated with soybeans in east North America
J Tang, ESP Bromfield, N Rodrigue, S Cloutier, JT Tambong
Ecology and Evolution 2 (12), 2943-2961, 2012
602012
Uniformization for sampling realizations of Markov processes: applications to Bayesian implementations of codon substitution models
N Rodrigue, H Philippe, N Lartillot
Bioinformatics 24 (1), 56-62, 2008
602008
Statistical potentials for improved structurally constrained evolutionary models
CL Kleinman, N Rodrigue, N Lartillot, H Philippe
Molecular biology and evolution 27 (7), 1546-1560, 2010
572010
Detecting adaptation in protein-coding genes using a Bayesian site-heterogeneous mutation-selection codon substitution model
N Rodrigue, N Lartillot
Molecular Biology and Evolution 34 (1), 204-214, 2017
422017
On the statistical interpretation of site-specific variables in phylogeny-based substitution models
N Rodrigue
Genetics 193 (2), 557-564, 2013
422013
Population divergence in the wheat leaf rust fungus Puccinia triticina is correlated with wheat evolution
M Liu, N Rodrigue, J Kolmer
Heredity 122, 443-453, 2014
412014
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