Alberto Valdeolivas
Alberto Valdeolivas
Roche Pharma Research and Early Development, Basel, Switzerland
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The global phosphorylation landscape of SARS-CoV-2 infection
M Bouhaddou, D Memon, B Meyer, KM White, VV Rezelj, MC Marrero, ...
Cell 182 (3), 685-712. e19, 2020
Assessment of network module identification across complex diseases
S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ...
Nature methods 16 (9), 843-852, 2019
Random Walk With Restart On Multiplex And Heterogeneous Biological Networks
A Valdeolivas, L Tichit, C Navarro, S Perrin, G Odelin, N Levy, P Cau, ...
Bioinformatics, 2018
Integrated intra‐and intercellular signaling knowledge for multicellular omics analysis
D Türei, A Valdeolivas, L Gul, N Palacio‐Escat, M Klein, O Ivanova, ...
Molecular systems biology 17 (3), e9923, 2021
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms
M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ...
Molecular systems biology 17 (10), e10387, 2021
Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data
D Dimitrov, D Türei, M Garrido-Rodriguez, PL Burmedi, JS Nagai, C Boys, ...
Nature Communications 13 (1), 1-13, 2022
Identifying communities from multiplex biological networks by randomized optimization of modularity
G Didier, A Valdeolivas, A Baudot
F1000Research 7, 2018
MultiVERSE: a multiplex and multiplex-heterogeneous network embedding approach
L Pio-Lopez, A Valdeolivas, L Tichit, É Remy, A Baudot
Scientific Reports 11 (1), 1-20, 2021
Integrative proteomic and phosphoproteomic profiling of prostate cell lines
M Katsogiannou, JB Boyer, A Valdeolivas, E Remy, L Calzone, ...
PLOS ONE, 2019
De wit
M Bouhaddou, D Memon, B Meyer, KM White, VV Rezelj, ...
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TF activity inference from scRNA-seq data with DoRothEA as regulon resource
CH Holland, A Valdeolivas, J Saez-Rodriguez
Bioconductor, 2020
Simulated intensity profiles for cylindrical objects in magnification mammography: the effect of the spectrum
KD Palma-Alejandro, A Valdeolivas, T Alieva, M Chevalier, E Guibelalde, ...
Revista Brasileira de Física Médica 5 (3), 233-238, 2011
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L Sui, J Li, J Philp, K Yang, Y Wei, H Li, J Li, L Li, M Ryder, R Toh, Y Zhou, ...
Scientific Reports 12 (1), 2022
Mapping the epithelial–immune cell interactome upon infection in the gut and the upper airways
M Poletti, A Treveil, L Csabai, L Gul, D Modos, M Madgwick, M Olbei, ...
NPJ systems biology and applications 8 (1), 1-19, 2022
Computational drug repurposing against SARS-CoV-2 reveals plasma membrane cholesterol depletion as key factor of antiviral drug activity
S Barsi, H Papp, A Valdeolivas, DJ Tóth, A Kuczmog, M Madai, ...
PLoS computational biology 18 (4), e1010021, 2022
Community assessment of methods to deconvolve cellular composition from bulk gene expression
BS White, A de Reyniès, AM Newman, JJ Waterfall, A Lamb, F Petitprez, ...
bioRxiv, 2022
P020 Mapping the changing intercellular communication and its downstream effect in Ulcerative Colitis
L Potari-gul, D Modos, D Turei, A Valdeolivas, M Madgwick, ...
Journal of Crohn's and Colitis 15 (Supplement_1), S138-S139, 2021
Reprogramming of the intestinal epithelial-immune cell interactome during SARS-CoV-2 infection
M Poletti, A Treveil, L Gul, D Modos, M Madgwick, M Olbei, B Bohar, ...
bioRxiv, 2021
OmnipathR: utility functions to work with Omnipath in R
A Valdeolivas, A Gabor, D Turei, J Saez-Rodriguez
Approaches to explore multiplex biological networks and application to study premature aging diseases
A Valdeolivas Urbelz
Aix-Marseille, 2019
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