| The global phosphorylation landscape of SARS-CoV-2 infection M Bouhaddou, D Memon, B Meyer, KM White, VV Rezelj, MC Marrero, ... Cell 182 (3), 685-712. e19, 2020 | 953 | 2020 |
| Assessment of network module identification across complex diseases S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ... Nature methods 16 (9), 843-852, 2019 | 303 | 2019 |
| Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data D Dimitrov, D Türei, M Garrido-Rodriguez, PL Burmedi, JS Nagai, C Boys, ... Nature communications 13 (1), 3224, 2022 | 299* | 2022 |
| Random Walk With Restart On Multiplex And Heterogeneous Biological Networks A Valdeolivas, L Tichit, C Navarro, S Perrin, G Odelin, N Levy, P Cau, ... Bioinformatics, 2018 | 278 | 2018 |
| Integrated intra‐and intercellular signaling knowledge for multicellular omics analysis D Türei, A Valdeolivas, L Gul, N Palacio‐Escat, M Klein, O Ivanova, ... Molecular systems biology 17 (3), e9923, 2021 | 239 | 2021 |
| COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021 | 90 | 2021 |
| MultiVERSE: a multiplex and multiplex-heterogeneous network embedding approach L Pio-Lopez, A Valdeolivas, L Tichit, É Remy, A Baudot Scientific reports 11 (1), 8794, 2021 | 45 | 2021 |
| Identifying communities from multiplex biological networks by randomized optimization of modularity G Didier, A Valdeolivas, A Baudot F1000Research 7, 2018 | 23 | 2018 |
| Integrative proteomic and phosphoproteomic profiling of prostate cell lines M Katsogiannou, JB Boyer, A Valdeolivas, E Remy, L Calzone, ... PLOS ONE, 2019 | 21 | 2019 |
| Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics A Valdeolivas, B Amberg, N Giroud, M Richardson, EJC Gálvez, S Badillo, ... NPJ precision oncology 8 (1), 10, 2024 | 18 | 2024 |
| Computational drug repurposing against SARS-CoV-2 reveals plasma membrane cholesterol depletion as key factor of antiviral drug activity S Barsi, H Papp, A Valdeolivas, DJ Tóth, A Kuczmog, M Madai, ... PLoS computational biology 18 (4), e1010021, 2022 | 10 | 2022 |
| De wit M Bouhaddou, D Memon, B Meyer, KM White, VV Rezelj, ... E, 0 | 10 | |
| Contextualizing protein representations using deep learning on protein networks and single-cell data MM Li, Y Huang, M Sumathipala, MQ Liang, A Valdeolivas, ... bioRxiv, 2023.07. 18.549602, 2023 | 9 | 2023 |
| Community assessment of methods to deconvolve cellular composition from bulk gene expression BS White, A de Reyničs, AM Newman, JJ Waterfall, A Lamb, F Petitprez, ... nature communications 15 (1), 7362, 2024 | 8 | 2024 |
| Contextual AI models for single-cell protein biology MM Li, Y Huang, M Sumathipala, MQ Liang, A Valdeolivas, ... Nature Methods 21 (8), 1546-1557, 2024 | 8 | 2024 |
| Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches A Niarakis, M Ostaszewski, A Mazein, I Kuperstein, M Kutmon, ... Frontiers in Immunology 14, 1282859, 2024 | 4 | 2024 |
| A network medicine approach to study comorbidities in heart failure with preserved ejection fraction JD Lanzer, A Valdeolivas, M Pepin, H Hund, J Backs, N Frey, ... BMC medicine 21 (1), 267, 2023 | 4 | 2023 |
| Mapping the epithelial–immune cell interactome upon infection in the gut and the upper airways M Poletti, A Treveil, L Csabai, L Gul, D Modos, M Madgwick, M Olbei, ... NPJ Systems Biology and Applications 8 (1), 15, 2022 | 4 | 2022 |
| Chrysalis: decoding tissue compartments in spatial transcriptomics with archetypal analysis D Túrós, J Vasiljevic, K Hahn, S Rottenberg, A Valdeolivas Communications Biology 7 (1), 1520, 2024 | 3 | 2024 |
| Charting the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics A Valdeolivas, B Amberg, N Giroud, M Richardson, EJC Gálvez, S Badillo, ... bioRxiv, 2023.01. 23.525135, 2023 | 3 | 2023 |
Julio Saez RodriguezHeidelberg UniversityVerified email at uni-heidelberg.de
