Dominique Lavenier
Dominique Lavenier
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Cited by
Cited by
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
Gigascience 2 (1), 2047-217X-2-10, 2013
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
Assemblathon 1: a competitive assessment of de novo short read assembly methods
D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ...
Genome research 21 (12), 2224-2241, 2011
DSK: k-mer counting with very low memory usage
G Rizk, D Lavenier, R Chikhi
Bioinformatics 29 (5), 652-653, 2013
Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species
TC Mathers, Y Chen, G Kaithakottil, F Legeai, ST Mugford, ...
Genome biology 18, 1-20, 2017
Evaluation of the streams-C C-to-FPGA compiler: an applications perspective
J Frigo, M Gokhale, D Lavenier
Proceedings of the 2001 ACM/SIGDA ninth international symposium on Field …, 2001
GASSST: global alignment short sequence search tool
G Rizk, D Lavenier
Bioinformatics 26 (20), 2534-2540, 2010
Multiple comparative metagenomics using multiset k-mer counting
G Benoit, P Peterlongo, M Mariadassou, E Drezen, S Schbath, D Lavenier, ...
PeerJ Computer Science 2, e94, 2016
Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
F Legeai, G Rizk, T Walsh, O Edwards, K Gordon, D Lavenier, N Leterme, ...
BMC genomics 11, 1-9, 2010
Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph
G Benoit, C Lemaitre, D Lavenier, E Drezen, T Dayris, R Uricaru, G Rizk
BMC bioinformatics 16, 1-14, 2015
GATB: genome assembly & analysis tool box
E Drezen, G Rizk, R Chikhi, C Deltel, C Lemaitre, P Peterlongo, ...
Bioinformatics 30 (20), 2959-2961, 2014
SAMBA: hardware accelerator for biological sequence comparison
P Guerdoux-Jamet, D Lavenier
Bioinformatics 13 (6), 609-615, 1997
PLAST: parallel local alignment search tool for database comparison
H Van Nguyen, D Lavenier
BMC bioinformatics 10, 1-13, 2009
Compareads: comparing huge metagenomic experiments
N Maillet, C Lemaitre, R Chikhi, D Lavenier, P Peterlongo
BMC bioinformatics 13, 1-10, 2012
GPU accelerated RNA folding algorithm
G Rizk, D Lavenier
Computational Science–ICCS 2009: 9th International Conference Baton Rouge …, 2009
Samba: Systolic accelerator for molecular biological applications
D Lavenier
INRIA/IRISA report, 1996
COMMET: comparing and combining multiple metagenomic datasets
N Maillet, G Collet, T Vannier, D Lavenier, P Peterlongo
2014 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2014
FPGA implementation of the k-means clustering algorithm for hyperspectral images
D Lavenier
Los Alamos National Laboratory LAUR 00-3079, 2000
Using blocks of skewers for faster computation of pixel purity index
JP Theiler, DD Lavenier, NR Harvey, SJ Perkins, JJ Szymanski
Imaging Spectrometry VI 4132, 61-71, 2000
Experience with a hybrid processor: K-means clustering
M Gokhale, J Frigo, K Mccabe, J Theiler, C Wolinski, D Lavenier
The Journal of Supercomputing 26, 131-148, 2003
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