| Tau-mediated disruption of the spliceosome triggers cryptic RNA splicing and neurodegeneration in Alzheimer’s disease YC Hsieh, C Guo, HK Yalamanchili, M Abreha, R Al-Ouran, Y Li, ... Cell reports 29 (2), 301-316. e10, 2019 | 121 | 2019 |
| Extensive cryptic splicing upon loss of RBM17 and TDP43 in neurodegeneration models Q Tan, HK Yalamanchili, J Park, A De Maio, HC Lu, YW Wan, JJ White, ... Human molecular genetics 25 (23), 5083-5093, 2016 | 102 | 2016 |
| An ultra-fast and scalable quantification pipeline for transposable elements from next generation sequencing data HH Jeong, HK Yalamanchili, C Guo, JM Shulman, Z Liu PACIFIC SYMPOSIUM ON BIOCOMPUTING 2018: Proceedings of the Pacific Symposium …, 2018 | 80 | 2018 |
| Transcriptional regulation by ATOH1 and its target SPDEF in the intestine YH Lo, E Chung, Z Li, YW Wan, MM Mahe, MS Chen, TK Noah, KN Bell, ... Cellular and molecular gastroenterology and hepatology 3 (1), 51-71, 2017 | 78 | 2017 |
| Loss of function of NCOR1 and NCOR2 impairs memory through a novel GABAergic hypothalamus–CA3 projection W Zhou, Y He, AU Rehman, Y Kong, S Hong, G Ding, HK Yalamanchili, ... Nature neuroscience 22 (2), 205-217, 2019 | 62 | 2019 |
| Inferring gene regulatory networks by integrating ChIP-seq/chip and transcriptome data via LASSO-type regularization methods J Qin, Y Hu, F Xu, HK Yalamanchili, J Wang Methods 67 (3), 294-303, 2014 | 62 | 2014 |
| RBM17 interacts with U2SURP and CHERP to regulate expression and splicing of RNA-processing proteins A De Maio, HK Yalamanchili, CJ Adamski, VA Gennarino, Z Liu, J Qin, ... Cell reports 25 (3), 726-736. e7, 2018 | 57 | 2018 |
| Comparative and quantitative proteomics reveal the adaptive strategies of oyster larvae to ocean acidification R Dineshram, R Sharma, K Chandramouli, HK Yalamanchili, I Chu, ... Proteomics 15 (23-24), 4120-4134, 2015 | 54 | 2015 |
| Inference of gene-phenotype associations via protein-protein interaction and orthology P Wang, WF Lai, MJ Li, F Xu, HK Yalamanchili, R Lovell-Badge, J Wang PloS one 8 (10), e77478, 2013 | 52 | 2013 |
| Forniceal deep brain stimulation induces gene expression and splicing changes that promote neurogenesis and plasticity AE Pohodich, H Yalamanchili, AT Raman, YW Wan, M Gundry, S Hao, ... Elife 7, e34031, 2018 | 48 | 2018 |
| Data analysis pipeline for RNA‐seq experiments: from differential expression to cryptic splicing HK Yalamanchili, YW Wan, Z Liu Current protocols in bioinformatics 59 (1), 11.15. 1-11.15. 21, 2017 | 46 | 2017 |
| The current status and challenges in computational analysis of genomic big data Y Qin, HK Yalamanchili, J Qin, B Yan, J Wang Big data research 2 (1), 12-18, 2015 | 45 | 2015 |
| Acacetin causes a frequency-and use-dependent blockade of hKv1. 5 channels by binding to the S6 domain HJ Wu, W Wu, HY Sun, GW Qin, HB Wang, P Wang, HK Yalamanchili, ... Journal of molecular and cellular cardiology 51 (6), 966-973, 2011 | 44 | 2011 |
| Apparent bias toward long gene misregulation in MeCP2 syndromes disappears after controlling for baseline variations AT Raman, AE Pohodich, YW Wan, HK Yalamanchili, WE Lowry, ... Nature communications 9 (1), 3225, 2018 | 39 | 2018 |
| Correlated evolution of transcription factors and their binding sites S Yang, HK Yalamanchili, X Li, KM Yao, PC Sham, MQ Zhang, J Wang Bioinformatics 27 (21), 2972-2978, 2011 | 35 | 2011 |
| Disruption of MeCP2–TCF20 complex underlies distinct neurodevelopmental disorders J Zhou, H Hamdan, HK Yalamanchili, K Pang, AE Pohodich, J Lopez, ... Proceedings of the National Academy of Sciences 119 (4), e2119078119, 2022 | 33 | 2022 |
| DDGni: dynamic delay gene-network inference from high-temporal data using gapped local alignment HK Yalamanchili, B Yan, MJ Li, J Qin, Z Zhao, FYL Chin, J Wang Bioinformatics 30 (3), 377-383, 2014 | 30 | 2014 |
| Partial loss of CFIm25 causes learning deficits and aberrant neuronal alternative polyadenylation CE Alcott, HK Yalamanchili, P Ji, ME van der Heijden, A Saltzman, ... Elife 9, e50895, 2020 | 28 | 2020 |
| Genome-wide distribution of linker histone H1. 0 is independent of MeCP2 A Ito-Ishida, HK Yamalanchili, Y Shao, SA Baker, LD Heckman, LA Lavery, ... Nature neuroscience 21 (6), 794-798, 2018 | 27 | 2018 |
| SpliceNet: recovering splicing isoform-specific differential gene networks from RNA-Seq data of normal and diseased samples HK Yalamanchili, Z Li, P Wang, MP Wong, J Yao, J Wang Nucleic acids research 42 (15), e121-e121, 2014 | 24 | 2014 |
zhandong liuAssociate Professor, Baylor College of MedicineVerified email at bcm.edu
