Leo van Iersel
Leo van Iersel
Associate professor, TU Delft
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WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads
M Patterson, T Marschall, N Pisanti, L Van Iersel, L Stougie, GW Klau, ...
Journal of Computational Biology 22 (6), 498-509, 2015
Networks: expanding evolutionary thinking
E Bapteste, L van Iersel, A Janke, S Kelchner, S Kelk, JO McInerney, ...
Trends in Genetics 29 (8), 439-441, 2013
Ancient Dispersal of the Human Fungal Pathogen Cryptococcus gattii from the Amazon Rainforest
F Hagen, PC Ceresini, I Polacheck, H Ma, F Nieuwerburgh, T Gabaldón, ...
PloS one 8 (8), e71148, 2013
The complexity of the single individual SNP haplotyping problem
R Cilibrasi, L Van Iersel, S Kelk, J Tromp
Algorithmica 49, 13-36, 2007
Geographically structured populations of Cryptococcus neoformans variety grubii in Asia correlate with HIV status and show a clonal population structure
K Khayhan, F Hagen, W Pan, S Simwami, MC Fisher, R Wahyuningsih, ...
PLoS One 8 (9), e72222, 2013
Constructing level-2 phylogenetic networks from triplets
L Van Iersel, J Keijsper, S Kelk, L Stougie, F Hagen, T Boekhout
Annual International Conference on Research in Computational Molecular …, 2008
Locating a tree in a phylogenetic network
L Van Iersel, C Semple, M Steel
Information Processing Letters 110 (23), 1037-1043, 2010
Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters
L Van Iersel, S Kelk, R Rupp, D Huson
Bioinformatics 26 (12), i124-i131, 2010
Constructing the simplest possible phylogenetic network from triplets
L van Iersel, S Kelk
Algorithmica 60 (2), 207-235, 2011
Every ternary permutation constraint satisfaction problem parameterized above average has a kernel with a quadratic number of variables
G Gutin, L van Iersel, M Mnich, A Yeo
Journal of Computer and System Sciences, 2011
Nonbinary tree-based phylogenetic networks
L Jetten, L van Iersel
IEEE/ACM transactions on computational biology and bioinformatics 15 (1 …, 2016
Trinets encode tree-child and level-2 phylogenetic networks
L Van Iersel, V Moulton
Journal of mathematical biology 68 (7), 1707-1729, 2014
Uniqueness, intractability and exact algorithms: reflections on level-k phylogenetic networks
L Van Iersel, S Kelk, M Mnich
Journal of Bioinformatics and Computational Biology 7 (04), 597-623, 2009
How much information is needed to infer reticulate evolutionary histories?
KT Huber, L Van Iersel, V Moulton, T Wu
Systematic Biology 64 (1), 102-111, 2015
A practical algorithm for reconstructing level-1 phylogenetic networks
KT Huber, L Van Iersel, S Kelk, R Suchecki
IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (3), 635-649, 2010
When two trees go to war
L van Iersel, S Kelk
Journal of Theoretical Biology, 2010
On computing the maximum parsimony score of a phylogenetic network
M Fischer, L Van Iersel, S Kelk, C Scornavacca
SIAM Journal on Discrete Mathematics 29 (1), 559-585, 2015
Reconstructing phylogenetic level-1 networks from nondense binet and trinet sets
KT Huber, L Van Iersel, V Moulton, C Scornavacca, T Wu
Algorithmica 77, 173-200, 2017
Cycle killer... qu'est-ce que c'est? On the comparative approximability of hybridization number and directed feedback vertex set
S Kelk, L Van Iersel, N Lekic, S Linz, C Scornavacca, L Stougie
SIAM journal on discrete mathematics 26 (4), 1635-1656, 2012
On unrooted and root-uncertain variants of several well-known phylogenetic network problems
L Van Iersel, S Kelk, G Stamoulis, L Stougie, O Boes
Algorithmica 80, 2993-3022, 2018
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