Mathieu Blanchette
Mathieu Blanchette
Professor of Computer Science, McGill University
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Aligning multiple genomic sequences with the threaded blockset aligner
M Blanchette, WJ Kent, C Riemer, L Elnitski, AFA Smit, KM Roskin, ...
Genome research 14 (4), 708-715, 2004
Comparative analyses of multi-species sequences from targeted genomic regions
JW Thomas, JW Touchman, RW Blakesley, GG Bouffard, ...
Nature 424 (6950), 788-793, 2003
Variant histone H2A. Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning
B Guillemette, AR Bataille, N Gévry, M Adam, M Blanchette, F Robert, ...
PLoS biology 3 (12), e384, 2005
Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme
C Jeronimo, D Forget, A Bouchard, Q Li, G Chua, C Poitras, C Thérien, ...
Molecular cell 27 (2), 262-274, 2007
The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts
JR Wagner, S Busche, B Ge, T Kwan, T Pastinen, M Blanchette
Genome biology 15, 1-17, 2014
The butterfly plant arms-race escalated by gene and genome duplications
PP Edger, HM Heidel-Fischer, M Bekaert, J Rota, G Glöckner, AE Platts, ...
Proceedings of the National Academy of Sciences 112 (27), 8362-8366, 2015
Genome-wide orchestration of cardiac functions by the orphan nuclear receptors ERRα and γ
CR Dufour, BJ Wilson, JM Huss, DP Kelly, WA Alaynick, M Downes, ...
Cell metabolism 5 (5), 345-356, 2007
Discovery of regulatory elements by a computational method for phylogenetic footprinting
M Blanchette, M Tompa
Genome research 12 (5), 739-748, 2002
Identification and characterization of multi-species conserved sequences
EH Margulies, M Blanchette, D Haussler, ED Green, ...
Genome research 13 (12), 2507-2518, 2003
The Capsella rubella genome and the genomic consequences of rapid mating system evolution
T Slotte, KM Hazzouri, JA Ågren, D Koenig, F Maumus, YL Guo, K Steige, ...
Nature genetics 45 (7), 831-835, 2013
An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions
A Haudry, AE Platts, E Vello, DR Hoen, M Leclercq, RJ Williamson, ...
Nature genetics 45 (8), 891-898, 2013
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics): Preface
A Roychoudhury, M D'Souza
Reconstructing contiguous regions of an ancestral genome
J Ma, L Zhang, BB Suh, BJ Raney, RC Burhans, WJ Kent, M Blanchette, ...
Genome research 16 (12), 1557-1565, 2006
Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression
M Blanchette, AR Bataille, X Chen, C Poitras, J Laganière, C Lefèbvre, ...
Genome research 16 (5), 656-668, 2006
Multiple genome rearrangement and breakpoint phylogeny
D Sankoff, M Blanchette
Journal of computational biology 5 (3), 555-570, 1998
Phylo: a citizen science approach for improving multiple sequence alignment
A Kawrykow, G Roumanis, A Kam, D Kwak, C Leung, C Wu, E Zarour, ...
PloS one 7 (3), e31362, 2012
Global patterns of cis variation in human cells revealed by high-density allelic expression analysis
B Ge, DK Pokholok, T Kwan, E Grundberg, L Morcos, DJ Verlaan, J Le, ...
Nature genetics 41 (11), 1216-1222, 2009
Gene order breakpoint evidence in animal mitochondrial phylogeny
M Blanchette, T Kunisawa, D Sankoff
Journal of Molecular Evolution 49, 193-203, 1999
PhyME: a probabilistic algorithm for finding motifs in sets of orthologous sequences
S Sinha, M Blanchette, M Tompa
BMC bioinformatics 5, 1-17, 2004
Algorithms for phylogenetic footprinting
M Blanchette
Proceedings of the fifth annual international conference on Computational …, 2001
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