| Universal dependencies v1: A multilingual treebank collection J Nivre, MC De Marneffe, F Ginter, Y Goldberg, J Hajic, CD Manning, ... Proceedings of the Tenth International Conference on Language Resources and …, 2016 | 925 | 2016 |
| Universal Stanford dependencies: A cross-linguistic typology. MC De Marneffe, T Dozat, N Silveira, K Haverinen, F Ginter, J Nivre, ... LREC 14, 4585-4592, 2014 | 474 | 2014 |
| BioInfer: a corpus for information extraction in the biomedical domain S Pyysalo, F Ginter, J Heimonen, J Björne, J Boberg, J Järvinen, ... BMC bioinformatics 8 (1), 1-24, 2007 | 472 | 2007 |
| Distributional semantics resources for biomedical text processing S Moen, TSS Ananiadou Proceedings of LBM, 39-44, 2013 | 391 | 2013 |
| All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter, T Salakoski BMC bioinformatics 9 (11), 1-12, 2008 | 334 | 2008 |
| CoNLL 2018 shared task: Multilingual parsing from raw text to universal dependencies D Zeman, J Hajic, M Popel, M Potthast, M Straka, F Ginter, J Nivre, ... Proceedings of the CoNLL 2018 Shared Task: Multilingual parsing from raw …, 2018 | 325 | 2018 |
| An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17 (1), 1-19, 2016 | 260 | 2016 |
| Comparative analysis of five protein-protein interaction corpora S Pyysalo, A Airola, J Heimonen, J Björne, F Ginter, T Salakoski BMC bioinformatics 9 (3), 1-11, 2008 | 259 | 2008 |
| Extracting complex biological events with rich graph-based feature sets J Björne, J Heimonen, F Ginter, A Airola, T Pahikkala, T Salakoski Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, 10-18, 2009 | 237 | 2009 |
| Universal Dependencies 1.2 J Nivre, Ž Agić, MJ Aranzabe, M Asahara, A Atutxa, M Ballesteros, J Bauer, ... Universal Dependencies Consortium, 2015 | 179 | 2015 |
| Complex event extraction at PubMed scale J Björne, F Ginter, S Pyysalo, J Tsujii, T Salakoski Bioinformatics 26 (12), i382-i390, 2010 | 138 | 2010 |
| Large-scale event extraction from literature with multi-level gene normalization S Van Landeghem, J Björne, CH Wei, K Hakala, S Pyysalo, S Ananiadou, ... PloS one 8 (4), e55814, 2013 | 114 | 2013 |
| A graph kernel for protein-protein interaction extraction A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter, T Salakoski Proceedings of the workshop on current trends in biomedical natural language …, 2008 | 110 | 2008 |
| Joint morphological and syntactic analysis for richly inflected languages B Bohnet, J Nivre, I Boguslavsky, R Farkas, F Ginter, J Hajič Transactions of the Association for Computational Linguistics 1, 415-428, 2013 | 109 | 2013 |
| Building the essential resources for Finnish: the Turku Dependency Treebank K Haverinen, J Nyblom, T Viljanen, V Laippala, S Kohonen, A Missilä, ... Language Resources and Evaluation 48 (3), 493-531, 2014 | 94 | 2014 |
| The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20 (1), 1-23, 2019 | 75 | 2019 |
| University of Turku in the BioNLP'11 shared task J Björne, F Ginter, T Salakoski BMC bioinformatics 13 (11), 1-13, 2012 | 70 | 2012 |
| New techniques for disambiguation in natural language and their application to biological text F Ginter, J Boberg, J Järvinen, T Salakoski The Journal of Machine Learning Research 5, 605-621, 2004 | 62 | 2004 |
| Analysis of link grammar on biomedical dependency corpus targeted at protein-protein interactions S Pyysalo, F Ginter, T Pahikkala, J Boberg, J Järvinen, T Salakoski, ... Proceedings of the International Joint Workshop on Natural Language …, 2004 | 53 | 2004 |
| EXTRACTING CONTEXTUALIZED COMPLEX BIOLOGICAL EVENTS WITH RICH GRAPH‐BASED FEATURE SETS J Björne, J Heimonen, F Ginter, A Airola, T Pahikkala, T Salakoski Computational Intelligence 27 (4), 541-557, 2011 | 52 | 2011 |
Jari BjörnePost-doctoral researcher, University of Turku, FinlandAdresse e-mail validée de utu.fi
