Alejandro Reyes

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Coauteurs

Wolfgang HuberEMBL - European Molecular Biology LaboratoryAdresse e-mail validée de embl.de
Simon AndersBioquant Center, University of HeidelbergAdresse e-mail validée de fs.tum.de
Andreas TrumppHI-STEM & DKFZ, Heidelberg, GermanyAdresse e-mail validée de hi-stem.de
Simon HaasBerlin Institute of Health (BIH), Charité, BIMSB-MDC, German Cancer Research Center (DKFZ), HI-STEMAdresse e-mail validée de dkfz-heidelberg.de
Marieke EssersDKFZ / HI-STEM, Heidelberg, GermanyAdresse e-mail validée de dkfz.de
Lars SteinmetzEMBL / Stanford UniversityAdresse e-mail validée de embl.de
Jenny HanssonSenior Lecturer, Lund UniversityAdresse e-mail validée de med.lu.se
Jeroen KrijgsveldGerman Cancer Research Center & Heidelberg UniversityAdresse e-mail validée de dkfz.de
Simon Renders, MDDKFZ / Hi-STEM / Heidelberg University HospitalAdresse e-mail validée de dkfz.de
Carl HerrmannLecturer - Health Data Science Unit - BioQuant and Medical Faculty HeidelbergAdresse e-mail validée de uni-heidelberg.de
Benedikt BrorsDivision of Applied Bioinformatics, German Cancer Research Center DKFZ HeidelbergAdresse e-mail validée de dkfz.de
Daniel B LipkaHead, Section Translational Cancer Epigenomics, DKFZ & NCT HeidelbergAdresse e-mail validée de dkfz.de
Dieter WeichenhanDKFZ HeidelbergAdresse e-mail validée de dkfz.de
Christoph PlassProfessor für Epigenetik, DKFZ, HeidelbergAdresse e-mail validée de dkfz.de
Lei GuIndependent Group Leader @ Max Planck Institute for Heart and Lung ResearchAdresse e-mail validée de mpi-bn.mpg.de
Roland EilsProfessor for Digital Health, Charité-Universitätsmedizin Berlin and Berlin Institute of HealthAdresse e-mail validée de charite.de
michael milsomGerman Cancer Research Center (DKFZ) & Heidelberg Institute for Stem Cell Technology andAdresse e-mail validée de hi-stem.de
David BrocksPostdoctoral researcher, Weizmann Institute of ScienceAdresse e-mail validée de weizmann.ac.il
Jernej UleThe Francis Crick Institute, UK Dementia Research Institute at King's, Institute of ChemistryAdresse e-mail validée de crick.ac.uk
Julian KönigInstitute of Molecular Biology, MainzAdresse e-mail validée de imb-mainz.de

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Alejandro Reyes

Novartis Institute for Biomedical Research

Adresse e-mail validée de embl.de - Page d'accueil

Bioinformatics Statistics R software development Epigenomics RNA


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Orchestrating high-throughput genomic analysis with Bioconductor W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ... Nature methods 12 (2), 115-121, 2015	2881	2015
Detecting differential usage of exons from RNA-seq data S Anders, A Reyes, W Huber Genome Research, 2012	1446	2012
Identification of regulatory networks in HSCs and their immediate progeny via integrated proteome, transcriptome, and DNA methylome analysis N Cabezas-Wallscheid, D Klimmeck, J Hansson, DB Lipka, A Reyes*, ... Cell stem cell 15 (4), 507-522, 2014	482	2014
Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements K Zarnack, J König, M Tajnik, I Martincorena, S Eustermann, I Stévant, ... Cell 152 (3), 453-466, 2013	423	2013
Myc depletion induces a pluripotent dormant state mimicking diapause R Scognamiglio, N Cabezas-Wallscheid, MC Thier, S Altamura, A Reyes, ... Cell 164 (4), 668-680, 2016	208	2016
Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues A Reyes, W Huber Nucleic acids research 46 (2), 582-592, 2018	190	2018
A practical guide to methods controlling false discoveries in computational biology K Korthauer, PK Kimes, C Duvallet, A Reyes, A Subramanian, M Teng, ... Genome Biology 20 (1), 118, 2019	160	2019
Single-cell transcriptome analysis reveals coordinated ectopic gene-expression patterns in medullary thymic epithelial cells P Brennecke, A Reyes, S Pinto, K Rattay, M Nguyen, R Küchler, ... Nature Immunology, 2015	134	2015
Drift and conservation of differential exon usage across tissues in primate species A Reyes, S Anders, RJ Weatheritt, TJ Gibson, LM Steinmetz, W Huber Proceedings of the National Academy of Sciences 110 (38), 15377-15382, 2013	110	2013
Personal receptor repertoires: olfaction as a model. LD Olender T, Waszak SM, Viavant M, Khen M, Ben-Asher BMC Genomics, 2012	99	2012
Large-Scale Topological Changes Restrain Malignant Progression in Colorectal Cancer SE Johnstone, A Reyes, Y Qi, C Adriaens, E Hegazi, K Pelka, JH Chen, ... Cell, 2020	85	2020
CTCF-mediated chromatin loops between promoter and gene body regulate alternative splicing across individuals M Ruiz-Velasco, M Kumar, MC Lai, P Bhat, AB Solis-Pinson, A Reyes, ... Cell systems 5 (6), 628-637. e6, 2017	69	2017
RNA sequencing identifies novel non-coding RNA and exon-specific effects associated with cigarette smoking MM Parker, RP Chase, A Lamb, A Reyes, A Saferali, JH Yun, BE Himes, ... BMC Medical Genomics 10 (1), 58, 2017	52	2017
Transcriptome-wide profiling and posttranscriptional analysis of hematopoietic stem/progenitor cell differentiation toward myeloid commitment D Klimmeck, N Cabezas-Wallscheid, A Reyes*, L von Paleske, ... Stem cell reports 3 (5), 858-875, 2014	38	2014
Data-driven polymer model for mechanistic exploration of diploid genome organization Y Qi, A Reyes, SE Johnstone, MJ Aryee, BE Bernstein, B Zhang Biophysical Journal 119 (9), 1905-1916, 2020	32	2020
An orally available, brain penetrant, small molecule lowers huntingtin levels by enhancing pseudoexon inclusion CG Keller, Y Shin, AM Monteys, N Renaud, M Beibel, N Teider, T Peters, ... Nature communications 13 (1), 1-11, 2022	22	2022
Reproducible and replicable comparisons using SummarizedBenchmark PK Kimes, A Reyes Bioinformatics, 2019	10	2019
Programmatic access to bacterial regulatory networks with regutools J Chávez, C Barberena-Jonas, JE Sotelo-Fonseca*, ... Bioinformatics, btaa575, 2020	3	2020
Mutated SF3B1 is associated with transcript isoform changes of the genes UQCC and RPL31 both in CLLs and uveal melanomas A Reyes, C Blume, V Pelechano, P Jakob, LM Steinmetz, T Zenz, ... bioRxiv, 2013	1	2013
TRAWLING: a Transcriptome Reference Aware of spLIciNG events N Di Nanni, A Reyes, D Ho, R Ihry, A Kauffmann, EY Durand, A de Weck biorxiv, 2021		2021

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